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Detailed information on CNT30694343


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553975Oryza sativaOryza glaberrima53.3269.0499.52417forward
CNT30102227Oryza sativaOryza rufipogon36.4530.5899.3285forward

Expression of CNT30694343

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MWQPRPSSVPVAWFPIGAIDGGREMQQQQQMRNLVLPQVYLHL*

>peptide 2 (37 aa)
MQLFGILLLGLFTVQNVRSSECDFGNYHFCCISKAGRF

Sequence

>CNT30694343
GATCGAGAAATTAAAACCTGTCTTGCGGCGCCCATTTTAATTTCGTTTATTCCCTGTTAATTTTTCCTCAATTGCTGTAGGATTCCCGATAGGTAGCCAC
CTAGCCCAAAATTCGCTCGAAATCCTGTGGATCCCCGGTTCATTTGGCGCCGGGATCTGACAGCGTGGCATGTGGCAGCCGCGGCCAAGCTCAGTGCCGG
TTGCCTGGTTCCCCATAGGCGCGATCGACGGAGGCCGAGAGATGCAGCAGCAGCAGCAGATGCGCAACCTTGTCCTTCCACAGGTGTACCTTCATCTATA
GAACATGGAGAAAATTTTCACTGGTTATCAGTATTTTTGCCTGGCAACCCATGCCTCTCCTGCCTCCCCTCAAGGAAAATGAGAAAAAAACAGCACATGC
ATAGAGAAGCTGACAAGAGTGATAGTGAGGGATAGAGATCACACATGTCTGGGACGCCATATCAAAAGCTGCAGCCGTCAGGTTCAATAACTCCAGTTTA
GCCATCTTGATTTCTTTTAGCACATCAATAAGATTACCCAGGAGCAAACTTGTTTCCTGCAGAAATAGATGAACCTCATTAGCCTGCTAAACATATATTT
CTAATATAGAACCTGTAACACATGACATCATCTACAGTAAAAGCATAGTTGTTTCTATTCTCAAATAGATGCAACTTTTCGGTATATTATTATTAGGATT
ATTTACTGTGCAGAATGTAAGAAGTTCAGAATGTGATTTCGGTAATTATCATTTTTGTTGTATCTCCAAAGCAGGGAGATTC