Detailed information on CNT30694276


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005563, E-value = 3e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596379Oryza sativaOryza meridionalis97.3892.3498.341265forward
CNT30109541Oryza sativaOryza longistaminata39.0326.0498.22507forward
CNT30102291Oryza sativaOryza rufipogon39.1182.4799.41508forward
CNT30578214Oryza sativaOryza barthii36.4135.5997.89473forward

Expression of CNT30694276

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PASPYGSRCAFLRPLACPRRDGVWILPRAVKVPY*

>peptide 2 (29 aa)
PRVPTAAAALSYDPSHAPAATECGSSPVQ*

>peptide 3 (75 aa)
RESLRQPLRFPTTPRMPPPRRSVDPPPCSEGALLGRCRPVRRPYPNPSMSEAIVGSLMSSGKIRVLCKSGKFRLA*

>peptide 4 (48 aa)
MPGPLVWLASEVYFKHLLVTLTTFKPVLIVAVREFLHHTANVPLWLLH*

>peptide 5 (38 aa)
MPFIMDRNQIYHVPVHETFAGWRAQRSDMIPILILWRV*

Sequence

>CNT30694276
CCCGCGAGTCCCTACGGCAGCCGCTGCGCTTTCCTACGACCCCTCGCATGCCCCCGCCGCGACGGAGTGTGGATCCTCCCCCGTGCAGTGAAGGTGCCCT
ACTAGGTCGCTGTCGTCCAGTCCGCCGACCATATCCCAACCCATCGATGTCTGAAGCTATTGTAGGTTCCCTTATGTCCTCAGGGAAAATACGTGTACTC
TGTAAGAGCGGAAAATTCAGGCTTGCTTAGCCACCCAAGACTCTGCCCCCTGCCTACTCCATCTCCAAGGAAGCTGCATGCCTGGGCCACTGGTCTGGTT
GGCTAGCGAGGTGTATTTCAAGCATCTACTTGTGACATTAACAACTTTCAAACCTGTGCTGATTGTGGCAGTCAGGGAATTCCTGCATCATACAGCGAAT
GTGCCTTTATGGCTGCTACACTAGCTACACTTCCAATTTATAGTTTTAAAATTCGTTAAATTAAATTGTGCCAAAGTAGTGTGATATTACTTGGATTGAT
GCCATTTATCATGGATAGAAATCAAATATATCATGTTCCAGTTCATGAAACTTTTGCAGGATGGAGAGCACAGAGGAGTGACATGATTCCCATCCTCATT
CTTTGGAGAGTTTGATAGGATAAAACTTTGTACTTTAATTAGCTGGAATCTGGCCATACCCTTGAAGAGGACAAGGGAGCCACACACAAAAAAAATGTAT
TGGCAAGAGATGCTTTGCACTGGACAAAGCATTGATCTTCTGTTTTCTTAAGTTTTTTTTTTCCAGAAACAGGACGTGGCTTTTTTTTTGCCGTATTTCT
GTTGAAGTCAGATTTCATAAATCAATTTAAACCAGCATTACAATGTGTCACCCTCGGATGGCTGGGAAGTTAGCTAGAAGCCGAGATTGAGCAGTATTTT
TTGGCAGTAACTGCTAGGATGATGCACATGTGCAGTGTGAAATCCCTTCCAGTGCCCAACTGCTAGGATGATGGACATGCTCATGGGATACCCCTTAAGA
CAACGACGTCGAGCACTATTCCGATAACAATTGGCTGGAGTACTATTATGAGACAATGTCTTAAAAGTAACTGAGATATAAACCTCTATGGTTTGCATAC
CATATAAACTTCTACTGGTCACACGATAGAAGATATACACTTGCTGTTGATTATGTAAATGTTATATACTGAAGTACTATTTTGAGCACTTGGTGTTGAT
CATGTAAATGTTATATACTGAAGTACTATTTTGAGACATTTTTTATAGAGTAAAGTGCACGGGCGATCCTTAAACTTGTAGGGGTGTGTCATCTAGGTC