Detailed information on CNT30694161


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000968, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371012Oryza sativaOryza glumipatula94.4526.2792.38800forward
CNT30103630Oryza sativaOryza rufipogon57.5100.2193.84487reverse complement

Expression of CNT30694161

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLLSQMSLYYAILWYPCALAYLLCGLLSMSYAHSCNNQSNLL*

>peptide 2 (38 aa)
MLYLVIICLAPGLELDLYSRVWLFRMVGPVQHGCAVQC*

>peptide 3 (37 aa)
MMDLYIKLSVCVPRLIPGRGFYAQISSEITSEFPGVT*

>peptide 4 (34 aa)
VYKGVIMIQERCAVMGYVVQGVLSQLFSEVPWWY*

>peptide 5 (54 aa)
MLILAIINQTSFEDKGSRRRRRLAYTPVELPVGVELKPSLDRYSAAVFFSFVSM*

>peptide 6 (58 aa)
MFFVISLTPLTIIMDVILGNNLLSSWFGVRSVQPGMVVQDGWACAAWVCCSVLIKIFN*

>peptide 7 (60 aa)
MLCKGYCHNSFPRYRGGIEAHGDMMWGCVLWVQWYTSGQSKTIRIAVPAVMGGLSNVFRD*

Sequence

>CNT30694161
TTGTTTATAAGGGGGTGATTATGATCCAGGAAAGGTGCGCTGTAATGGGTTATGTTGTGCAAGGGGTATTGTCACAACTCTTTTCCGAGGTACCGTGGTG
GTATTGAGGCACATGGTGATATGATGTGGGGTTGTGTCTTGTGGGTACAGTGGTACACCTCTGGCCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGT
TATGGGCGGGTTGAGCAATGTTTTTCGTGATTAGTCTCACACCTCTCACAATAATTATGGATGTTATACTTGGTAATAATTTGCTTAGCTCCTGGTTTGG
AGTTAGATCTGTACAGCCGGGTATGGTTGTTCAGGATGGTTGGGCCTGTGCAGCATGGGTGTGCTGTTCAGTGTTGATTAAAATTTTTAATTAATTACTC
TACTGTTTTACTACTCTTAACTCTTTGCTAAATGCTGCTTTCGCAAATGAGCCTATATTATGCCATCCTTTGGTATCCTTGTGCACTTGCATATTTGCTG
TGTGGCTTGTTGAGTATGTCATATGCTCATTCTTGCAATAATCAATCAAACCTCCTTTGAAGATAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACC
CCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGATCGTTATTCCGCTGCTGTTTTCTTTTCTTTTGTAAGTATGTAACGTTATTATTATG
ATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGATTTTATGCACAAATAAGTTCGGAAATTACTAGTGAATTTCCGG
GCGTGACATAAAGGCCCAGCAATGTCTTCAATATTCTTCTCTCGAGG