Detailed information on CNT30694079


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005633, E-value = 2e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554111Oryza sativaOryza glaberrima10091.3699.55444forward
CNT30106577Oryza sativaOryza longistaminata47.52100100211forward
CNT30102126Oryza sativaOryza rufipogon99.197.7899.55440forward

Expression of CNT30694079

Peptides detected in this lncRNA

>peptide 1 (47 aa)
PLILGREKHVENIHEMAQDAARAAAGDSKATATARWRSPLRWPPYHR*

>peptide 2 (61 aa)
PSFWAGKNMWKISTRWRRMQRVRRRATQRRRRRRGGALPSGGHLITDETGYCEGDGVSVLA*

>peptide 3 (57 aa)
SPHSGPGKTCGKYPRDGAGCSACGGGRLKGDGDGEVALSPPVATLSPMKRAIVKVMG*

Sequence

>CNT30694079
TCCCCTCATTCTGGGCCGGGAAAAACATGTGGAAAATATCCACGAGATGGCGCAGGATGCAGCGCGTGCGGCGGCGGGCGACTCAAAGGCGACGGCGACG
GCGAGGTGGCGCTCTCCCCTCCGGTGGCCACCTTATCACCGATGAAACGGGCTATTGTGAAGGTGATGGGGTGAGTGTACTGGCTTGAGGGGTTTGTGAG
GCTTATGTTCTTGGATGACCAGACATTCTAATTATGAGAAACGTCAAGGGCCTAATTGTGAGGGTGGCATCCTCACCCTGTGGCATTAATTGATGCTGCT
GCTATATTTTTGCATGAATTCAGACATGTTTGTGAAATCATTATCTTTGAGCTCTAGGCCTTGATGATACTACAATATCATTGTTTTAATGATTAATCCA
TAGTGCAATTCTTGCACTGAGACATCAGACGTGGTTATGTTAGC