« Back to Oryza sativa search


Detailed information on CNT30694010


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596372Oryza sativaOryza meridionalis24.9423.1296.54289forward

Expression of CNT30694010

Peptides detected in this lncRNA

>peptide 1 (30 aa)
AAAYPNCVAGCLPPAAPALPAVASSSTCAI*

>peptide 2 (40 aa)
PPPTPTASLAAYLLPRLHCRPSPLVPPAPSSRHHCASEHK*

>peptide 3 (37 aa)
MERQLDLARTDGCSTTQDSNLFFMPFSIQQNSCYITD*

>peptide 4 (33 aa)
MAGRCCTAKTDAQGLSAVTRLLSGSIVIFSETS*

>peptide 5 (32 aa)
MVTKHSSFLKQNFWINGETDETGASEDNTCEC*

Sequence

>CNT30694010
GCCGCCGCCTACCCCAACTGCGTCGCTGGCTGCCTACCTCCTGCCGCGCCTGCACTGCCGGCCGTCGCCTCTAGTTCCACCTGCGCCATCTAGCCGCCAC
CACTGCGCAAGTGAGCACAAGTGAGGCTGGGCGCTGCAGGGGTGCACCTCGCCGTCGAGGGGATCAGAGGCCGGCTGGATCTTTTGATCTGCCCATGTCG
ACCCGATGACCCCAACATCATCTCCACGTCACCACCTATTCTCCTCGCTAGTCGCCGCCCTAATTGCGTGACGAATTGTGATGGCAGGGAGGTGTTGCAC
GGCAAAAACTGACGCACAGGGCTTGTCAGCAGTTACTAGATTATTGTCTGGTAGCATCGTAATTTTTTCGGAGACATCTTGATGTACTAAAGGATTTCAA
GAGAATGTTTTTTTTATGAGAACTCGAGATAATTGAATAGCAATGGAGAGGCAGCTTGATCTGGCAAGAACTGACGGGTGCAGTACTACACAAGACAGTA
ACCTCTTTTTTATGCCTTTTTCCATTCAACAAAATTCATGTTACATAACCGATTGAATGATCTTGGACACAAATAATGGGAGCATCATTTTGTTCTCAGA
TTATTCTATTGGTTATATATTTTGACATTTTCAGTTCAAATCTATTTTAGTAGGAACCAAGATGAATACACTCCATTGGCCTGACTAAATTATAGTCAGG
TAGTATTCCAAGTTTTCATTAGTTCCTACAAGATCGGTCATTGATGGGCTTGATTTTTTGCCCGCAAGGCCACAACAAGTTGGATGCAACACAAGAGCTA
TTTCCATATCTGTAAAGCTATTGCTGACACACTATCTAAATTGGAATCATATGAAACTAGATGGTGACAAAGCATTCCTCATTCCTTAAACAAAATTTCT
GGATCAATGGTGAGACAGATGAGACTGGTGCATCTGAAGACAATACCTGCGAATGTTGATGGGATCATCATCGTATAACAAAGGAATTTGTCCACTACAC
CTCCAAGCACATACTTATAGATCGAGTGTTTAATTTTGATAGACATCAAGATGTTGGTTCTGTTTGAATGACTTAATTATTTAGCTGGATGCGGTGAACA
AATTTTTATTATGTATTGCAATGAATAAATGTGGTTGATTGTCTACAATTGGTCAGAAC