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Detailed information on CNT30693943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000867, E-value = 2e-148

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553350Oryza sativaOryza glaberrima57.1463.8299.26404forward
CNT30596942Oryza sativaOryza meridionalis58.2737.4595.39412forward
CNT30371382Oryza sativaOryza glumipatula55.8756.9296.71395forward

Expression of CNT30693943

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVWIVWFISVLTFLITACRDVRIFRGDSAEISNNFRT*

Sequence

>CNT30693943
AATAGATGTGAGCTGTTAGATCTTATTTAGTCTCTTTATATAACCAACCAAAAAAAACAAACGAAAAAAAAAGAAACAGGAGCGATTCTCCTGTAGCCCT
AGCCGCCGCACCTCCTGCGCTCTGCCGCTGCCGCTGCTGTTCCTCTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGTCGCCGGTCGCCACAACCGTCGTCG
TCCGCAGCCGGTCGTTGGAAGGACGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAATTT
GGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTAC
ACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGATCC
TTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGTTTATATCGGTATTGACCTTTCTTATAACTGCCTGTCGTGATGTCCGTATT
TTTAGGGGAGACTCTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTGTATTTTGGTGTGGCATTCTAGATACGTGGTTACCTGGGGTGTTAC
AAAACCG