Detailed information on CNT30693936


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553839Oryza sativaOryza glaberrima21.6319.3199.06106forward
CNT30370219Oryza sativaOryza glumipatula8040.7997.19392forward
CNT30101639Oryza sativaOryza rufipogon102.4557.7797.01502forward
CNT30116861Oryza sativaOryza nivara21.6319.3199.06106forward

Expression of CNT30693936

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKQTIIKHNKHHQTQPQRLVLLVVMQLQPCH*

>peptide 2 (30 aa)
MRRRRTSRGRRRRRSGNGGGGARSTSSEYGE

>peptide 3 (59 aa)
MSKYYNHQFITSQTSTHVLSKNYIKSDCSLPPLLARSTGDEHISHKTRQDYNTHCLLMV*

Sequence

>CNT30693936
CACAAGGATAGATTCATTGCTGCAAACATTATAGCATAGGTTCAATGTCAAAATATTACAATCATCAGTTCATCACATCACAAACCAGCACACATGTGCT
CTCCAAGAATTACATCAAATCGGATTGTTCTCTTCCACCCTTATTAGCAAGGAGCACTGGAGATGAACACATCTCACATAAGACTAGACAAGATTACAAC
ACACATTGCTTATTAATGGTCTAGATTAATGAAAACAACATGAAGCAAACCATAATTAAACATAATAAGCATCATCAGACACAACCACAGAGGCTAGTAC
TACTAGTTGTAATGCAGCTGCAACCATGCCATTGATGCCAATGGCCATGGCGTGCGAGCTCTCCATGGTGGCTCAGAACTGGAAGGCGATGAGTTCATGA
GAAGACGTAGAACCAGTAGAGGAAGGCGACGGAGAAGGAGTGGGAACGGCGGCGGCGGAGCACGTTCAACTTCATCGGAGTACGGCGAAC