Detailed information on CNT30693823


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 6e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523172Oryza sativaSetaria italica54.629.0792.39184forward
CNT30500037Oryza sativaCoffea canephora57.8633.2892.31195forward

Expression of CNT30693823

Peptides detected in this lncRNA

>peptide 1 (77 aa)
EHGELHLLVLVLDLLGLGVRLLLALLGAAAEAEHEVEGGLLLDVVVGEGAAGPGGSLPCPGSWPSRCRWCPRTPPPA*

>peptide 2 (43 aa)
MVSEDSTSSVMVFPVRVFTKICILAAAGEGSPPRLRRREGWGEG

>peptide 3 (44 aa)
STASFTFLCLCLIFLGLVYVFFLRFLAPPRRRSTRWRVDSFWML*

Sequence

>CNT30693823
GGAGCACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAG
CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT
GTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGCGGGGGAGGGGTCGCCT
CCGCGGCTGCGGCGGCGAGAGGGGTGGGGGGAAGGTG