Detailed information on CNT30693800


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553887Oryza sativaOryza glaberrima68.8236.8196.921333forward
CNT3099695Oryza sativaOryza rufipogon50.7549.8792.27983forward
CNT30116780Oryza sativaOryza nivara19.62103.8395.79380forward

Expression of CNT30693800

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGMVNNGDDLCPAWVKNKIVTCCHGGHKDGTMITLMLLLLLFIL*

>peptide 2 (35 aa)
MLRKFPMVIYDMVIILYKWNIFIEELPLLFMKIGN*

>peptide 3 (73 aa)
MGTVVFAIWHGRLSISNITDSASLRERMCSPHGVRIRLGPIFPSGIGSWPLWRNTLRAHARLIFEQCSGFVIG*

>peptide 4 (70 aa)
MTPRPESRRHHCRRRPPRELVATPPRTASAQKERGRTNRLLPLARVCRTKSYLRNQLSKASPIQFLLRSC*

>peptide 5 (70 aa)
MQDVRCLVTITLHRVPEFLRTVLSRVILSRLPVWFGRWAYRNIYIFIFSAAFKLFYLAGRPNYYVRPMHR*

>peptide 6 (59 aa)
STSTPKAEALNPLIHRERPRHRRAPRRPNRTPPLSPHHRAVASVSFLSIPRAIRLIGPP*

>peptide 7 (44 aa)
MEYFYRGVAFVVYEDWKLKIMILDLGGKWCAYGSSCAPIGGVFA*

Sequence

>CNT30693800
CTTCAACCTCCACTCCTAAAGCGGAAGCCCTAAACCCTCTGATTCACCGGGAACGGCCGCGCCACCGTCGCGCCCCGCGCCGGCCAAACAGAACGCCGCC
GCTGAGCCCACACCATCGAGCCGTCGCCTCGGTGAGTTTCCTCTCGATTCCTCGCGCCATCAGGCTCATAGGACCTCCATAAATCCATTTTCGAAATCTC
TTTTATGACCCCTCGACCGGAGAGCCGCCGCCACCATTGCCGCCGCCGACCGCCTCGGGAGCTCGTCGCCACGCCACCTCGGACCGCCTCCGCCCAAAAA
GAACGCGGGAGGACGAATCGATTGTTGCCGTTGGCGAGAGTGTGCAGGACCAAGAGTTATTTGAGGAACCAACTGAGCAAGGCAAGTCCTATTCAATTCC
TACTTCGATCATGTTGAATCCTATATCTTCGCAAATGCTTTATTATTTTATAAATTGCATGCGATGTTTTATAAAGAAAATGGGGTATTGGTAGAAATAA
CCTAATTGCTGCATTACCTACCTTGATATATTGATTATCGTTGAAGCCCTAGGCTGAGAATATGTGTGTGTTGTACATGCACAATGTGGGTATATTCGAG
CTGCTACTATAGCTACTTGCTTAGCCATGCTTAGAAAATTTCCAATGGTTATATATGACATGGTAATCATTCTTTACAAATGGAATATTTTTATAGAGGA
GTTGCCTTTGTTGTTTATGAAGATTGGAAACTGAAAATAATGATTTTAGACTTGGGCGGCAAGTGGTGTGCATATGGTAGTAGTTGCGCACCGATAGGGG
GAGTGTTCGCCTAGGTCAATTAAGGACTGAACTACGTGTCACCAACTAAGATTACAGTGCAACCACATGTGTTGGTTATGGGGCAACCTTAGCTTATTAT
GTTGCTTATTGCTTAACCTTGCATTGGGAGGCCGTTGTAGTAGGGACTAGTCTGAGCAATGGTTCATAGGAGCTACACATGTGACCCTCTATGGGAACGG
TTGTGTTCGCCATATGGCATGGGCGTCTGAGCATATCCAATATTACTGATAGTGCCTCGTTGAGGGAACGGATGTGTTCGCCTCACGGCGTTAGGATTAG
GTTGGGGCCCATCTTTCCTAGTGGCATTGGTTCATGGCCATTGTGGAGAAACACTCTCCGTGCGCATGCAAGGTTAATCTTTGAGCAATGTAGTGGCTTC
GTCATAGGCTAGCAAAACAGGTACCGGTTTGGTATCGCGTGGCATGGTTTACATGATTGCTAGCTCGTGTCATGTGCGTAAAGTGCACAAACTCTGCAGA
GTCTAAACTAATTGATTAGCCGTGCTCACGGTCATGAGCGACTTGGTGAAATGATACAAGTATAATGTTCGTGACTTTTGTTAAGTAAATTCTGAAATGG
GTATGGTAAATAATGGTGATGATTTATGCCCAGCATGGGTTAAGAATAAAATTGTTACTTGTTGCCATGGAGGGCACAAGGATGGCACTATGATAACATT
AATGTTACTATTACTGTTGTTTATCCTTTGATTTACAAAATTTCGTTGCAATCTACTATTATTTACTATTGTGAAACAAAATTTGCTTTATGCTGAAAAT
GAGCCACAAATATAGCCATCCTTGATCTCAGCTTACAATAATCCTAGGTTTCCCAAGGTTTGGGTAGGACTTGCCAATACCTAGTGTATTGACCCACCTA
TTGTTGTTGTTTTTAGACTTGGATGCAGGATGTGAGGTGCCTAGTGACGATTACTTTGCACCGGGTACCGGAGTTTTTGAGGACGGTTCTTTCTAGGGTG
ATTCTTAGTCGGTTGCCTGTGTGGTTTGGTAGATGGGCATACCGGAACATATATATCTTTATCTTTTCCGCTGCGTTTAAACTCTTTTATTTGGCCGGTC
GGCCTAACTACTATGTAAGACCTATGCACCGTTAAGT