Detailed information on CNT306938


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 2e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697171Zea maysOryza sativa9.3221.3998.6574forward
CNT30677059Zea maysSetaria viridis10.3322.8498.7882forward
CNT30297025Zea maysTriticum aestivum9.3228.0395.9574forward
CNT30662842Zea maysTriticum dicoccoides15.9922.7288.98127forward
CNT30465769Zea maysSaccharum spontaneum31.2343.1393.15248forward
CNT30498583Zea maysDigitaria exilis13.2222.2989.52105forward
CNT30117889Zea maysOryza nivara17.2524.2591.24137forward

Expression of CNT306938

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SGTNGSSSHITIRMKRFVPPLDNLHAWALHILQTLTYSFLSR*

>peptide 2 (53 aa)
MILRGGDQDLEPDSLRATVSAELVAGLWDDSASGTEHGPSGMDQLVGLVPAPR*

>peptide 3 (95 aa)
MQQRMTWHCSAAWRPSLQARRPLGGAGDDGEQVVAEGVAEVLGEVQSVGDPVVLGAADEDDLRDHGHHQVDGDAVAEVVEGVAVQEQRAGLHAFR*

>peptide 4 (32 aa)
MSFGFRLSDSDIATLYLPATKCEIFGKLRSVV*

Sequence

>CNT306938
CTCAGGCACCAATGGAAGCAGCAGTCATATCACAATCAGAATGAAAAGGTTTGTTCCCCCTCTCGATAATTTACACGCGTGGGCATTGCACATTCTTCAG
ACCCTCACATACAGCTTTTTATCCCGGTAAAATCAAAGACGGCATGCAGCAGCGCATGACTTGGCATTGCTCGGCGGCGTGGCGTCCGTCCTTACAGGCT
AGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGGTCCAGTCCGTTGGTGATCCGGTAG
TACTCGGCGCCGCCGACGAGGATGACCTCCGCGATCACGGCCACCACCAGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCCAGGA
GCAGCGCGCCGGTCTGCATGCGTTCAGGTGACACACATCATCCATGAGCTTTGGGTTCAGACTTTCAGATTCAGATATTGCTACTTTGTATCTACCAGCT
ACAAAATGTGAAATCTTTGGAAAACTACGTTCTGTAGTGTGATGATTCTGAGAGGTGGTGATCAGGACCTTGAACCAGACAGCCTCAGGGCCACAGTTAG
CGCCGAACTTGTTGCAGGCCTCTGGGATGACAGCGCCAGCGGCACCGAGCATGGCCCATCTGGCATGGATCAGCTCGTAGGCCTGGTACCTGCACCACGT
TGATGGTAGGATAAGTTTGCTGAATAGTTGGGACTATAATCCAATTATTTGTTTGTGTATATTCACAACGGTTAAGCTGTGAAATTATGTGTTT