Detailed information on CNT30693774


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116768Oryza sativaOryza nivara67.0567.6899.36932forward

Expression of CNT30693774

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKFSTLKGQNYRLNFWALYVTCFVLFSRPEVSYDVRIKCKCHRPFPN*

>peptide 2 (47 aa)
MFICVTLLCFGASNQLKICTENSKKKKFQNDVTSNQFNREGDMFLLR*

>peptide 3 (47 aa)
MQIQWNRRSRHYATNADMTCWLSYVHISRSMDKVNFPGGPSGLHVSD*

>peptide 4 (34 aa)
MQMPSSLSKLTVCGLPKGDAFDISVRYTVKHCIY*

>peptide 5 (38 aa)
MRSTRIEAPHKQSDHHHHPRRRPRIAHEPALHGGHVCT*

>peptide 6 (36 aa)
YILYKLTRARRHGKTSDSCRITVQEDNHFLEPAKAN*

>peptide 7 (44 aa)
MYPTRHPASHPLKETAATGQGVTWCPRRSQKAQGNQPDWDKRNC*

>peptide 8 (40 aa)
MSHVLYFLAGQRSAMMFGSNANAIVPFQIDGLWFAKGRCF*

Sequence

>CNT30693774
TATATTCTCTATAAATTAACAAGAGCAAGAAGACATGGAAAAACATCGGACTCATGTAGAATCACAGTCCAAGAAGATAACCACTTCCTAGAGCCGGCCA
AGGCAAATTAAAGTACCAAGAGAGAATTCCAGCAGCACAAAAGCTAGAGGTTTATTACTAGCAAAGCCAGTATATATCAACGGCCTGTAGCAATCTGCTG
ACAGGACAAGGTGTGTTCTTGCAGTCCACATAAGCAGAAACCAAAGCAAAAGGCTAGCTAGCTATATAGTTGGAGGTTGGAGATAGAAGTCGATCATCCA
TCAACCAGTTGCTGCCTCCAATTAATTCTCAAAATTTTGAAGTCCGCGTATATATTGTTGAAACAGGAACTCAATTTAATTCATCAGCAATTGACAGGTG
ACTAGCACCATATAGCATGCAGCTAGCCAATAATCCGGAAAAAGAAATTAAAAGGTAGATCCAAGAATGAATTAGAGCTAGAGAGACTTATATTTATAAA
ACGTCCTCCACCATGACAGTGACCAGATGATATAAATCCATGCGTAGTACACGGATCGAAGCACCACATAAGCAATCTGATCATCATCATCATCCTCGTC
GTCGACCTCGTATAGCTCACGAGCCAGCTTTGCATGGAGGCCATGTGTGCACATAGTGCCTAATAAAATCATCATGAAACATGCAAATCCAATGGAATAG
GAGGAGTCGCCACTATGCCACAAATGCTGACATGACATGTTGGCTCTCCTATGTCCACATAAGCAGGAGTATGGATAAAGTGAACTTTCCAGGTGGCCCC
TCTGGCCTCCATGTATCCGACTAGGCACCCGGCCTCCCATCCACTCAAAGAGACAGCAGCAACAGGACAAGGGGTGACCTGGTGTCCACGTAGGAGCCAA
AAAGCGCAGGGTAACCAACCTGATTGGGACAAGAGAAATTGCTAAGGGGCACAATTAATCAAACTCCGTGTAGCATGCATTATGTTTATTTGTGTGACTC
TCTTGTGTTTCGGTGCTTCGAACCAACTGAAGATTTGTACGGAGAATAGTAAAAAAAAAAAATTTCAAAACGATGTAACGAGTAACCAATTCAACCGAGA
AGGTGACATGTTCCTGCTACGATGAGAAAAATAGCCAATTAAGATGAAATTCAGTACACTGAAAGGACAAAACTATAGGTTGAATTTTTGGGCTTTGTAT
GTCACATGTTTTGTACTTTTTAGCCGGCCAGAGGTCAGCTATGATGTTCGGATCAAATGCAAATGCCATCGTCCCTTTCCAAATTGACGGTTTGTGGTTT
GCCAAAGGGAGATGCTTTTGACATCTCTGTTCGATATACTGTCAAACACTGCATATATTAATCCATCATTTTCTCCCCTTCATGTCAAAA