Detailed information on CNT30693682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101813Oryza sativaOryza rufipogon38.9153.7599.6251reverse complement
CNT30576409Oryza sativaOryza barthii90.766.4899.49585forward

Expression of CNT30693682

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDSEVAATGGSSASGVWCSHEQIRQQQGL*

>peptide 2 (53 aa)
RSLTSSPPTLSLSHLPNPCSTSHHRLRHNPSSPPTSCLLPLDGALACSQSIIP*

>peptide 3 (61 aa)
TFAHFLSPYSLPLPSPQSLLHEPPPPPPQPLISPYVVPPPSRWCLGMLPINNSLSSSAYCC*

>peptide 4 (37 aa)
MSLSRMDLGMVSGIEALPSELWQRAEFSTMMAARCCD*

>peptide 5 (50 aa)
VRSLPLPLLSPSPISPIPAPRATTASATTPHLPLRRASSLSMVPWHAPNQ*

Sequence

>CNT30693682
ACGTTCGCTCACTTCCTCTCCCCCTACTCTCTCCCTCTCCCATCTCCCCAATCCCTGCTCCACGAGCCACCACCGCCTCCGCCACAACCCCTCATCTCCC
CCTACGTCGTGCCTCCTCCCTCTCGATGGTGCCTTGGCATGCTCCCAATCAATAATTCCTTGAGCTCGTCGGCATACTGCTGTTAACGACCAGCATCAAC
AACTGCATGGATTCGGAGGTGGCAGCAACAGGCGGATCGAGCGCTAGTGGTGTTTGGTGCTCTCACGAGCAAATCCGGCAACAGCAAGGGCTCTAGCAGG
CGGATCCAGCGGTGGGTGCTCTTGCGAGCACATCCGGCAGTAGCAAGGGCTCTAGCAGGCGGATCCAGCGGCGGCAAGGGCTCTCGCGGCGGCGGGTGCT
CTTGCGGGCAGATCCAGCAGTGACAATGACTTGTGGGCGGATCCAGCGATGTCGCTCTCTCGCATGGACCTAGGGATGGTAAGCGGCATCGAAGCCCTCC
CCAGCGAGCTATGGCAACGGGCGGAGTTCTCCACTATGATGGCGGCTAGGTGTTGCGATTAGTGTATTGTGTGTTGATTCTATGATGATGTGCTTGTGTA
CTTCGGTTCTCGGATGTTGAGCGATGAATGTTCGATTGTGACGTG