Detailed information on CNT30693652


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L4S3|HIRL1_ORYSJ, E-value = 8e-73

BLAST vs NONCODE:
NONATHT001763, E-value = 7e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675691Oryza sativaSetaria viridis32.1722.4786.49111forward
CNT30521034Oryza sativaSetaria italica92.7590.483.44320forward
CNT30530635Oryza sativaEucalyptus grandis38.8419.3984.33134forward
CNT30194604Oryza sativaPisum sativum68.1263.1778.72235forward
CNT30441068Oryza sativaAegilops tauschii57.6840.2885.93199forward
CNT30262753Oryza sativaBrassica rapa72.4628.8478.4250forward
CNT30471513Oryza sativaSaccharum spontaneum88.9974.5189.25307forward
CNT30219137Oryza sativaKalanchoe fedtschenkoi75.0744.6679.92259forward
CNT30370230Oryza sativaOryza glumipatula48.9933.53100169forward
CNT30101718Oryza sativaOryza rufipogon72.1743.23100249forward
CNT30551158Oryza sativaOryza brachyantha24.9336.1394.1986forward

Expression of CNT30693652

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSRTAPGPWGMKTEEAFEEAPISFMVSKYWVMSTMSITSLAVVPGTFTENPSTLSLNPSTIA*

Sequence

>CNT30693652
CCTGAAGAAGGCCGTCGCGGATCTGCGTGGCGATGTCGCGGACGGCGCCGGGGCCATGGGGGATGAAGACGGAGGAGGCCTTTGAGGAGGCGCCGATCTC
CTTCATGGTGTCGAAGTACTGGGTGATGAGCACCATGTCCATCACGTCCTTGGCCGTGGTGCCCGGCACGTTCACTGAGAACCCCAGCACGCTGTCCCTC
AACCCATCCACGATCGCCTGACGCTGCCTCGCGATACCCAGCCCCGACAGGTACTTTGCTTCCGCTTCTCCCTCCGCCCTCTTTATCTGCACGATCTTCT
CTGCCTCTGCCTTCTCGTTTGCAGCCACCCTCAGCCTCGCAGCTG