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Detailed information on CNT30693639


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673198Oryza sativaSetaria viridis11.849.5695.58113forward
CNT30520893Oryza sativaSetaria italica13.4735.3494.57129forward
CNT30532753Oryza sativaEucalyptus grandis10.7541.5383.5103forward
CNT30285918Oryza sativaTriticum aestivum11.2722.9889.81108forward
CNT30384456Oryza sativaTriticum turgidum11.2720.1989.81108forward
CNT30591852Oryza sativaMusa acuminata10.0223.0291.6796forward
CNT30553623Oryza sativaOryza glaberrima9.636.6510092forward
CNT30435366Oryza sativaAegilops tauschii11.2723.7490.74108forward
CNT30240454Oryza sativaAvena sativa11.2730.6894.44108forward
CNT30655703Oryza sativaTriticum dicoccoides11.2730.0890.74108forward
CNT30131217Oryza sativaLolium perenne11.2721.6494.44108forward
CNT30679604Oryza sativaTriticum urartu11.2732.1490.74108forward
CNT30704201Oryza sativaPrunus avium8.9833.284.8886forward
CNT30149479Oryza sativaBrachypodium distachyon10.3325.7190.9199forward
CNT30496573Oryza sativaDigitaria exilis14.22595.59136forward

Expression of CNT30693639

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MYLRVVRQSARGDGLTASFLPEMELPARPFTATGWTATRDAIAAVNSREDAKLSR*

>peptide 2 (57 aa)
MDRIKKKQVWRRRRADVGHQRSAAEQQELEQEPPLGEGPRERLEELALHRSPTRIIQ*

>peptide 3 (58 aa)
MHAIFSFFTLPHECRDAKSRGDRKLKPNTWDRSTSHAASNWILYNLYSHRNSTIISTS*

>peptide 4 (89 aa)
MSVIRIEHGISGLKPHTPLATAISSASPLLLAYSSYVPAGGAAERPGRRPDGELPAGDGAAGEALHGDRLDGDEGRHCCGEFAGGRKAE*

>peptide 5 (32 aa)
MAIRPWGTSSTVQRICMDGSDQEEAGLATPTR*

>peptide 6 (37 aa)
MQHRIGSFTTYIAIGIVQLYQHHKQGELIHGDPAMGD*

>peptide 7 (34 aa)
MSRCKIEGRQKIKTEHMGSQYVACSIELDPLQLI*

Sequence

>CNT30693639
GTAAGTAGTAGTATCAAACTACTAAGGCCGGGTAATCATGCACGCCATTTTCAGTTTTTTCACACTACCACATGAATGTCGAGATGCAAAATCGAGGGGA
GACAGAAAATTAAAACCGAACACATGGGATCGCAGTACGTCGCATGCAGCATCGAATTGGATCCTTTACAACTTATATAGCCATAGGAATAGTACAATTA
TATCAACATCATAAACAGGGGGAATTAATCCATGGCGATCCGGCCATGGGGGACTAGCAGTACAGTACAGAGGATTTGCATGGATGGATCGGATCAAGAA
GAAGCAGGTCTGGCGACGCCGACGCGCTGACGTAGGCCACCAGCGATCCGCCGCCGAGCAGCAGGAACTTGAGCAGGAGCCCCCTCTTGGTGAAGGGCCC
CGCGAACGTCTCGAAGAACTTGCTCTGCATCGATCACCCACACGAATTATTCAGTAAATTAATCATCGAGCTAAGTATATATTTTAGTCAGGTAATACTA
ACCTGGAGAGGGTTGTACGGCGACGGCGCGTCGGAGCCGTACAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCCTCGAGGTCGAAGTAGACGCTCTTCT
CGCCGTACTTGGCCACCACGGCGGCGCGCGGCCTGTAGCAAAGAAATTATGAGCGTGATAAGAATTGAACACGGGATCTCGGGATTGAAACCACATACAC
CTCTTGCCACTGCAATATCAAGTGCATCTCCACTGTTACTCGCGTACTCCTCGTATGTACCTGCGGGTGGTGCGGCAGAGCGCCCGGGGCGACGGCCTGA
CGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCGAGGCCCTTCACGGCGACAGGCTGGACGGCGACGAGGGACGCCATTGCTGCGGTGAATTCGCGGGA
GGACGCAAAGCTGAGTAGATAGATGGATAGATAGCCGGTGTACTATCTGCGGCGGCGG