Detailed information on CNT30693637


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002862, E-value = 4e-143

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068336Oryza sativaLeersia perrieri74.1374.9583.54407forward
CNT30370347Oryza sativaOryza glumipatula10074.898.72549forward

Expression of CNT30693637

Peptides detected in this lncRNA

>peptide 1 (66 aa)
PNSQCLSPSPFPPHRRTLPSASTATASPAAAAAAGDGSPPLLREVLAWAKEKRPCVRNTWMIKEID*

>peptide 2 (61 aa)
QFPVSLAIPISPTSSDVAVRLHRNGVSCCCCGRRRRISSASPRGTCLGERKETVRKEYMDD*

>peptide 3 (55 aa)
PIPSVSRHPHFPHIVGRCRPPPPQRRLLLLLRPPATDLLRFSERYLLGRKKRDRA*

>peptide 4 (42 aa)
MSTCWKAYGVHFHMVLVPRQNSYRAVGNLQNKSCTSSSLNLI*

>peptide 5 (31 aa)
MESTFIWFWSHVKIPTELLGICKISHVPHPV*

Sequence

>CNT30693637
CCCAATTCCCAGTGTCTCTCGCCATCCCCATTTCCCCCACATCGTCGGACGTTGCCGTCCGCCTCCACCGCAACGGCGTCTCCTGCTGCTGCTGCGGCCG
CCGGCGACGGATCTCCTCCGCTTCTCCGAGAGGTACTTGCTTGGGCGAAAGAAAAGAGACCGTGCGTAAGGAATACATGGATGATTAAAGAAATTGATTA
GAGACCAAACCAAGACCTTCTCCAAGTCTACTTCTACCTCACCATGTTACTTTTGGTTCATAGAAGACAAGAGATAAAGTTCTATACGTTTTGGATTAGG
ATTCGGGCCTCCTGACAGCATCAACTTCAAACGGACCTAGCCGCTCATCTAGAAGGAATTTCGATCGTGGCCCATGAGTACTTGTTGGAAAGCTTATGGA
GTCCACTTTCATATGGTTTTGGTCCCACGTCAAAATTCCTACCGAGCTGTTGGGAATCTGCAAAATAAGTCATGTACCTCATCCAGTCTGAATCTGATTT
GAGTTTTGGGCCTTGTAATTGTGTCGTGGGCTTAGCCCATAGGGGTGTG