Detailed information on CNT30693616


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553667Oryza sativaOryza glaberrima91.4368.7499.22640forward

Expression of CNT30693616

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDSEVAATGGSSASGVWCSHEQIRQQQGL*

>peptide 2 (50 aa)
VRSLPLPLLSPSPISPIPAPRATTASATTPHLPLRRASSLSMVPWHAPNQ*

>peptide 3 (37 aa)
MSLSRMDLGMVSGIEALPSELWQRAEFSTMMAARCCD*

>peptide 4 (53 aa)
RSLTSSPPTLSLSHLPNPCSTSHHRLRHNPSSPPTSCLLPLDGALACSQSIIP*

>peptide 5 (61 aa)
TFAHFLSPYSLPLPSPQSLLHEPPPPPPQPLISPYVVPPPSRWCLGMLPINNSLSSSAYCC*

Sequence

>CNT30693616
ACGTTCGCTCACTTCCTCTCCCCCTACTCTCTCCCTCTCCCATCTCCCCAATCCCTGCTCCACGAGCCACCACCGCCTCCGCCACAACCCCTCATCTCCC
CCTACGTCGTGCCTCCTCCCTCTCGATGGTGCCTTGGCATGCTCCCAATCAATAATTCCTTGAGCTCGTCGGCATACTGCTGTTAACGACCAGCATCAAC
AACTGCATGGATTCGGAGGTGGCAGCAACAGGCGGATCGAGCGCTAGTGGTGTTTGGTGCTCTCACGAGCAAATCCGGCAACAGCAAGGGCTCTAGCAGG
CGGATCCAGCGGTGGGTGCTCTCGCAGGCCGATCCAGTGGCGGCAAGGGCTCTCACGGCGGTGGCGGCGGGTGCCATCGTGGGCTGATCTGGTGGCAGCA
AGGGCTCTAGCAGGCGGATCCAGCGGCGGCAAGGGCTCTCGCGGCGGCGGGTGCTCTTGCGGGCAGATCCAGCAGTGACAATGACTTGTGGGCGGATCCA
GCGATGTCGCTCTCTCGCATGGACCTAGGGATGGTAAGCGGCATCGAAGCCCTCCCCAGCGAGCTATGGCAACGGGCGGAGTTCTCCACTATGATGGCGG
CTAGGTGTTGCGATTAGTGTATTGTGTGTTGATTCTATGATGATGTGCTTGTGTACTTCGGTTCTCGGATGTTGAGCGATGAATGTTCGATTGTGACGTG