Detailed information on CNT30693609


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101666Oryza sativaOryza rufipogon60.0535.8699.6251forward
CNT30116744Oryza sativaOryza nivara57.1895.9899.16239forward

Expression of CNT30693609

Peptides detected in this lncRNA

>peptide 1 (46 aa)
SLLCRRTLSMGCTMTRRIIKPKVPFFELSCQLSFCLIEMHNHVHLC*

>peptide 2 (91 aa)
MFICANFSFLCSNMVEQIIQLEIRRSSGRMSLNGIKKLNLLRASKVVDIGTPQKKITLFVLKLLMLQRHCAIHLQMRIPKHYCKHILRTGK*

Sequence

>CNT30693609
AGTTTGCTTTGCAGGAGGACTTTGAGTATGGGGTGTACGATGACCAGACGTATCATAAAACCCAAGGTTCCATTTTTTGAACTATCTTGCCAGTTATCCT
TTTGTTTAATTGAAATGCATAATCATGTTCATTTGTGCTAATTTTTCATTCTTATGTAGTAATATGGTGGAACAAATTATCCAACTGGAGATAAGAAGGT
CTTCTGGGAGGATGTCTCTGAATGGTATCAAGAAACTGAACCTCCTCAGGGCTTCCAAGGTAGTAGACATTGGAACTCCTCAAAAAAAGATTACTCTCTT
TGTTCTGAAACTCCTGATGCTGCAAAGGCATTGTGCCATTCATTTACAAATGCGAATTCCTAAACATTACTGCAAACACATATTGAGAACGGGCAAATGA
ATGCATTACATCGTTGCT