Detailed information on CNT30693568


BLAST search results

BLAST vs Swiss-Prot:
sp|P27061|PPA1_SOLLC, E-value = 1e-21

BLAST vs NONCODE:
NONORUT004928, E-value = 4e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553696Oryza sativaOryza glaberrima95.3397.2898.6286forward
CNT30596301Oryza sativaOryza meridionalis32.3327.7191.7597forward
CNT30101925Oryza sativaOryza rufipogon99.33100100298forward

Expression of CNT30693568

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMLCASTAVLTLPQYGGGSTSPSPLLSSE*

>peptide 2 (95 aa)
LGLVGQGGEGGLIDVEHPDLLAMAGELEALGVGDGLVDHHVGVAAVSLAGQVVGDVLGAVRRHRLPADDVVRLHRRPHAAAVRRRINLAVAIVEQ*

Sequence

>CNT30693568
GCTTGGCCTGGTAGGGCAGGGTGGAGAGGGCGGTCTCATCGACGTCGAACACCCAGATCTCCTTGCCATGGCCGGAGAGCTTGAGGCTCTCGGCGTAGGC
GATGGCCTCGTTGATCACCACGTCGGAGTCGCGGCCGTATCGCTCGCCGGTCAAGTAGTCGGAGACGTACTCGGCGCAGTCCGCCGGCACCGTCTTCCAG
CCGATGATGTTGTGCGCCTCCACCGCCGTCCTCACGCTGCCGCAGTACGGCGGCGGATCAACCTCGCCGTCGCCATTGTTGAGCAGTGAGTGAGCTGCTG