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Detailed information on CNT30693553


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B0|PSBZ_SACHY, E-value = 4e-12

BLAST vs NONCODE:
NONORUT001181, E-value = 8e-128

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673559Oryza sativaSetaria viridis14.7873.2494.23208reverse complement
CNT30730376Oryza sativaCorchorus capsularis15.2153.6388.79214forward
CNT30196209Oryza sativaPisum sativum25.6667.4888.92361forward
CNT30492211Oryza sativaOlea europaea9.0326.1984.25127reverse complement
CNT30188310Oryza sativaSecale cereale30.2853.7286.85426forward
CNT30300556Oryza sativaTriticum aestivum49.8241.0296.15701forward
CNT30220912Oryza sativaHordeum vulgare29.579.287.23415forward
CNT30542882Oryza sativaBrassica napus47.937.3489.17674forward
CNT30236148Oryza sativaBrassica oleracea30.2827.7388.26426forward
CNT30556052Oryza sativaOryza glaberrima17.7100100249reverse complement
CNT30441515Oryza sativaAegilops tauschii45.298.9195.75636forward
CNT30628236Oryza sativaDaucus carota15.8520.5288.34223forward
CNT30361727Oryza sativaSorghum bicolor20.494.4195.12287forward
CNT30369712Oryza sativaOryza glumipatula16.3595.04100230reverse complement
CNT30425595Oryza sativaPapaver somniferum41.0898.889.1578forward
CNT30646125Oryza sativaCannabis sativa7.3223.3682.52103forward
CNT30109402Oryza sativaOryza longistaminata55.225999.36777forward
CNT30148380Oryza sativaBrachypodium distachyon28.9330.0196.81407forward
CNT30100129Oryza sativaOryza rufipogon38.4551.5298.71541forward
CNT30116897Oryza sativaOryza nivara20.9761.4698.64295forward
CNT30557406Oryza sativaPanicum hallii28.2994.3195.23398forward

Expression of CNT30693553

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MNPLILLFKTYYSPLFLFGYGVEGVLCFISQADIADPVYMDTVYRNISKRDLYLRCF*

>peptide 2 (60 aa)
MAEWLIAPVLKTGIVLGTIEGSNPSLSFCFPLSFLLRIEYICFFICFFCSVPLSFFHRKE*

>peptide 3 (62 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSPVGERIRYLPKPVGPWADPTLAPRR*

>peptide 4 (65 aa)
MARLDRITEPEQKKNSRTGINKKILVKRGHVKNRLQITIDSLFKSCCSSPGSSCMPQMAHKKEES*

>peptide 5 (45 aa)
MLYFTSGYSGSCIHGYSIQKYIEKGFVFEMFLEVSESFRMAMFYL*

Sequence

>CNT30693553
GGAAAATACAACGTTTTTATTGTTTGACCAACCATCAGGAGAAGCAAATACAAGGGGTACACTAATGACTTAGACTGAGGAAGTCACAATTAATGCAAAA
ACAGCTAATTGGAAAGCAATAGTCATATTTCTAATCCTCCAAGTTACCATCAAATAAAGTTGACTACATATTATATTTGATCCCTCACTTAATCAAAATT
GTAATAAAATACAAGAAGTAGGAGGGGTTTAATCATGAATCCATTGATTCTTCTCTTTAAAACTTATTACTCACCACTTTTTTTATTTGGATATGGGGTT
GAGGGGGTTTTATGCTTTATTTCACAAGCGGATATAGCGGATCCTGTATACATGGATACAGTATACAGAAATATATCGAAAAGGGATTTGTATTTGAGAT
GTTTCTAGAGGTTAGTGAGTCATTTCGTATGGCTATGTTCTATTTGTAGGAATAAAATAAGGATTAGGCTGTGGAGAGATGGCTGAGTGGTTGATAGCTC
CGGTCTTGAAAACCGGTATAGTTCTAGGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTTTCCTCTCTCTTTTCTTTTGCGTATTGAATACAT
TTGTTTCTTTATTTGTTTTTTTTGTTCTGTCCCCTTATCTTTCTTTCATAGAAAGGAATGAATGGCTCGGCTAGATAGAATAACCGAGCCAGAACAGAAA
AAAAACAGTAGAACAGGTATAAATAAGAAAATCTTAGTTAAGAGGGGTCATGTAAAGAACAGGCTCCAAATCACGATCGATTCCCTTTTCAAATCCTGCT
GCAGCAGCCCGGGCTCTTCCTGCATGCCACAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGGGAAGTCGCTAACCAACTTCTAGGAGAAACAT
AATTAACTGCATTGATCTCGGTACCTACGCCACCCACAGAATTTAAAGAGCCTAAAGGAGCATGGGTCATATATTCTGCTGAATGTCGTTCTTGCCAAGG
TTGTATGTCTTTTTTCAACCTACTCAAGTCCAAACCGTTGGGGCCCCTTAGAGGTTCTAACCATGGAGCACGAAGGTCCCAAAAACGCATAGTTTCCCCT
CCAAAAATAACCTCTCCCGTTGGGGAACGCATTAGATATTTACCTAAACCTGTGGGTCCTTGGGCAGATCCCACATTAGCTCCAAGACGCTGATCTCTAA
CTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGCCCAGTAGGTCCATAAAACTCACTCGGATAAGCTGTATTATTGAACCAGACAAAACAACAAGC
GATAAAACCAAAGACAGATAAAGCGCCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAG
ATATGCC