Detailed information on CNT30693534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596282Oryza sativaOryza meridionalis60.5968.3796.951379forward
CNT30370310Oryza sativaOryza glumipatula48.2473.6499.361098forward

Expression of CNT30693534

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLPSSCATDGRSQIANVLALWRSISFAECRVLAPKAMAMDSLELPNGCKNLWNRQVTPAFAGAVAVAQQ*

>peptide 2 (54 aa)
MMHIYLPRQQVRYFDRGGKVGRQQQKWQIWRFHVEVRCRCPTSRLLHLMSEEGH*

>peptide 3 (53 aa)
MQSPCSESDGHGLIRAPQRLQKLVESSGDTCVCRCSCSSTAIMQYIMEYDLMC*

>peptide 4 (52 aa)
MMHEACHELFWGKNDWSAMKLLPHTWFRIKRRYGVLKRFMYVLRMCLNLYQR*

>peptide 5 (46 aa)
MQDLVYFCIDDVMHQRWLHLTWKGTETIGKMWHFTSHRVTGKHAAV*

>peptide 6 (34 aa)
MALWVHSKHFGCWHELFDRKATRSGAWVVDHISD*

>peptide 7 (51 aa)
MVGVVMPIESSVASSMRTSSTAAIFLFQDRHATVLASSPLPLAESCISYRP*

>peptide 8 (51 aa)
GDYWFPSPRGGARPRRQWRIKLGFRSHPLPPSRPPPGAARKVHMPTDIGGT*

>peptide 9 (45 aa)
GLLVPLASRRGAAAAAMAHQIRVSLSPSSSFSAPTRRGSQGAHAH*

>peptide 10 (44 aa)
MLYSLLEFDTLRFFRIKICKTFPIHFCVKILQRSLQSMDPNNVQ*

Sequence

>CNT30693534
GGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGCATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGC
CCCCACCCGGCGCGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAA
GTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGTGATGACTTCCTTGATTCCTGGTGTGCTAGGTGTCGCGACTCGTG
TACAGATGGTGCATATCATATGGTGGGGGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTT
CAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGCAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAA
GCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGATTTGCAAGACGTTCCCCATCCATTTCTGTGTTA
AAATCCTTCAGAGATCACTGCAGAGCATGGATCCTAATAATGTACAGTAGCATCTAGAAAACGAAGTGAAAATGGAGATGGATGCAGGACCTAGTTTATT
TCTGCATTGATGATGTGATGCATCAACGATGGCTACACCTGACCTGGAAAGGGACTGAAACCATTGGAAAGATGTGGCATTTCACATCCCACCGGGTCAC
TGGGAAACATGCTGCCGTCTAGCTGTGCCACAGATGGACGGAGCCAGATCGCTAACGTTTTAGCACTGTGGCGGTCTATTTCTTTTGCAGAATGCAGAGT
CCTTGCTCCGAAAGCGATGGCCATGGACTCATTAGAGCTCCCCAACGGCTGCAAAAACTTGTGGAATCGTCAGGTGACACCTGCGTTTGCCGGTGCAGTT
GCAGTAGCACAGCAATAATGCAGTACATTATGGAGTACGACCTCATGTGTTGAGAGGAGGGGCATCTTTGGAATCTGAGTGTACGAGAGGGGGAAGGATC
CAGCAGCAGTGTTTGCTCAGACCCATAATTGACTGACCATCCCTTCCATTGGTTGCAACCCCAAGTGGCAGATTATTGTGCCTTTAATTGCCTGTTTCTT
TGGAGTTCAGACTTGAGAAGACGCGCTGATCGTCGTTTTCTTGGGGATGGGCCAGGTTAAGTGTCTGAGAGACTATTCAGACCTCACTGTTTGGCACTAA
AAATTTTCAGCGAAAATACAGTTTTTGGTAGCTGAAAAAAGCCGGTTCTTGCGCGACGGTGCTCTGATAAGTTCATTTGGTGGTGTTGCCGAGCGTACCA
GATGATGCATGAAGCTTGTCATGAACTTTTCTGGGGAAAGAATGATTGGTCAGCCATGAAACTGTTACCTCATACTTGGTTTCGCATTAAAAGACGTTAT
GGAGTTTTGAAAAGATTCATGTATGTGCTTCGTATGTGTCTAAATTTATATCAACGTTAATGAATCTAAATGAGGGATGAAGAGACCAAAACGTCTTAGA
ATGTGATAGAATGTGAAACGAAGGGAGTACTATGATGCACATATATTTGCCACGTCAACAAGTGCGATATTTTGATAGAGGAGGAAAAGTAGGGAGGCAA
CAACAGAAGTGGCAGATCTGGAGATTCCATGTAGAAGTGCGATGTAGGTGCCCCACATCACGACTACTACACCTAATGTCGGAGGAGGGACATTGACGTA
AACTGGAGCACGATGGCACTTTGGGTGCATTCAAAGCACTTTGGGTGTTGGCATGAACTATTCGATAGGAAGGCGACCAGAAGTGGTGCTTGGGTTGTTG
ACCACATAAGCGATTGACGATCTAATTGGTGGTATCGACCACTTTGGGCAAGTGATTCGGACTTTTCCATAAGCTGCTTTCAAGGAGATGGTCAGACATG
ACATACAAGATGTATTAAAGATGGAGGTGATTGATGTTCTTGATCGGTGGAGTTAAACGCTCTAGGTCGGGTGGCTCGAGGATGAGCTACATTCAATAGG
CAGATGACCAGACATGGTGCTTCGGTTGTTTAACGGCTAGTCACTTCATGTACGTGTTCAATCCTAGGTGCTGGTCCATTTGAAGACATGGAACCACTCG
TGTATGACAAAATTTCTTATGTATCCTAAAATTTTACCCAATTCTTTATATACCTTTTGATGTTTTACTCATTCTC