CANTATAdb - search

Detailed information on CNT30693518

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005083, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101747	Oryza sativa	Oryza rufipogon	78.06	92.2	99.25	402	forward
CNT30116762	Oryza sativa	Oryza nivara	37.09	14.86	96.34	191	reverse complement

Expression of CNT30693518

Peptides detected in this lncRNA

>peptide 1 (77 aa)
ICFAEPDRQTRLFSPHKHKLLYLLLLGGKRKSQQIDLHRMTQKADKKIENFHPESLENASKVGLFKQESNQMTTKSP*

Sequence

>CNT30693518
TATTTGCTTTGCAGAACCTGACAGGCAGACAAGATTATTCTCCCCCCACAAACATAAGCTTCTCTATCTATTATTACTAGGTGGAAAAAGAAAATCTCAA
CAAATCGATTTGCACAGAATGACACAAAAGGCAGACAAGAAAATTGAAAATTTCCACCCGGAATCGCTGGAAAACGCAAGTAAGGTAGGACTATTTAAGC
AGGAGTCCAACCAAATGACCACCAAGAGCCCATAATCCAACTCCGGCCGAGCAAAGAACCTGCTTTATTCATACGAGGTATCTTTGGGAGGGACGGAGGC
AGACGGCAGCGGGAGGTCAAGGGTGGCAGTTGGGGCACCGCCGGCGGCGGTGGAAGGAGGCAAAGAAGAGCAGAGCAAAGGGACCCTGGCTCAGCCGCTC
ATGGAGAGGAGGAGAGGAGGTGGATTTGCGGTGAGAGAGAGAGGAGGAAGGCGTTGACTTTTCCTGATTGGGCCTGGACTGGGCCGTGTGTTTTTTTTTC
TAAACTGTAGTTTCA