« Back to Oryza sativa search


Detailed information on CNT30693471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108684Oryza sativaOryza longistaminata47.159.1192.36157forward
CNT30116079Oryza sativaOryza nivara47.1516.1592.36157forward

Expression of CNT30693471

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSQPTSSDMKSMLSCLHGLVLSNSFMRSQLIRTDQVDFKHW

>peptide 2 (70 aa)
KDVFWWVENYFPIPLAKHCLIVLPGGGRQQSNPGVMGWDPSSREPQWQLRLGGPKPYSQALYSTPFAYRQ*

Sequence

>CNT30693471
TAAAGATGTTTTTTGGTGGGTGGAAAATTATTTCCCTATCCCATTAGCCAAACACTGCCTCATTGTCTTGCCAGGTGGAGGGAGGCAACAATCCAATCCA
GGAGTGATGGGATGGGATCCCAGCTCAAGGGAGCCCCAGTGGCAACTACGGTTGGGAGGACCTAAGCCCTACAGCCAAGCTCTATATTCAACCCCTTTTG
CTTACCGGCAATGAGTCAACCAACTTCCAGTGATATGAAGAGCATGTTAAGCTGTTTGCATGGTCTGGTGCTGTCAAATAGTTTTATGCGGTCACAACTC
ATACGAACTGATCAGGTTGACTTCAAGCATTGG