Detailed information on CNT30693441


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553834Oryza sativaOryza glaberrima101.4483.3198.05564forward
CNT30596216Oryza sativaOryza meridionalis100.1885.0499.28557forward
CNT30101916Oryza sativaOryza rufipogon10081.17100556forward
CNT30576334Oryza sativaOryza barthii101.4489.8198.4564forward

Expression of CNT30693441

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MQIGKKNESKKLGKSYNNLLPTSDHFKAPNLN*

>peptide 2 (33 aa)
QDENDKILFFLNIALLLPIYIQSTEQLVILLCR*

>peptide 3 (37 aa)
MTLPAQYRFPKWMARLLVSDFQDLISRTRNLIMTSKQ*

Sequence

>CNT30693441
CTCAAGATGAAAATGATAAAATACTTTTTTTCCTTAACATTGCACTTCTGCTTCCTATCTACATACAATCAACAGAACAGTTGGTGATTCTTCTATGCAG
ATAGGGAAAAAAAATGAATCAAAGAAGTTGGGCAAAAGCTACAACAATCTACTTCCAACTAGTGATCATTTTAAAGCTCCAAACTTGAACTGAAGCAGCA
AAATGATTACCGGTTGCTTACATGGAGAATGAATTTCATTAACAAATCTCAAATGCTCAACAATAGGTATTGTTGATCAACCGTGCCTTGCTGCTCAGAC
TTCCAGCCTTCCAGCCTTCCTGATCCAGTCAATCTTACAGAGGATTAACCACAGTTTGTGTTGCATTGGTTATCACCGGAGACCTTAGGACTTAAGCCTT
GATGACATTACCAGCACAGTACCGATTTCCGAAATGGATGGCCAGGTTGCTGGTAAGTGATTTCCAGGATCTTATCTCTAGAACTAGAAATCTCATCATG
ACATCGAAGCAATGAGATCCATACATGATGGGCCTTGTCCTCAGATCAACTGCCAA