Detailed information on CNT30693427


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30471892Oryza sativaSaccharum spontaneum23.118.0988.5113forward
CNT30130161Oryza sativaLolium perenne22.4913.190.91110forward
CNT30101770Oryza sativaOryza rufipogon52.3530.7399.61256forward

Expression of CNT30693427

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAFFANAAGGDGARSTIDEESESLCAKAAAAAAACPKK*

>peptide 2 (31 aa)
GEKNYLQKCLPSVKQEGLGIRGTRNFSTTKN*

>peptide 3 (88 aa)
MVPDPRSTRSRSRSVPRRRRRRPLVQRSSKGAIRGSPRKGNACRLRRRPRPLRRGGTGRARATAGSAWPSWAPARRCRTTRRCCCCCCR

>peptide 4 (47 aa)
MPPAPAAAAAAARWNRSSSSDGGIGMAFMGACTSLPNDSTVLLLLLPL

Sequence

>CNT30693427
CCGGCGAAAAAAACTATTTACAAAAATGTCTTCCCTCAGTTAAGCAAGAGGGTCTAGGCATAAGAGGTACACGGAATTTTTCTACTACTAAAAATTAAAA
AGAAATAAATGAACTAGCGGTCATCATGTAAAAACTCCGGCTGCTAGACCTCCATCGGCGGCGGACAGTTCAGATCAAGATCAAAAGCGATGGCTTTCTT
CGCCAACGCGGCGGGCGGTGATGGTGCCAGATCCACGATCGACGAGGAGTCGGAGTCGCTCTGTGCCAAGGCGGCGGCGGCGGCGGCCGCTTGTCCAAAG
AAGTAGTAAGGGTGCGATACGGGGTAGCCCTCGAAAGGGAAACGCATGCCGCCTGCGCCGGCGGCCGCGGCCGCTGCGGCGCGGTGGAACAGGTCGAGCT
CGAGCGACGGCGGGATCGGCATGGCCTTCATGGGCGCCTGCACGTCGCTGCCGAACGACTCGACGGTGCTGCTGTTGCTGCTGCCGCTG