Detailed information on CNT30693422


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178026Oryza sativaSecale cereale18.7623.8482.71133forward
CNT30283591Oryza sativaTriticum aestivum18.4853.4783.21131forward
CNT30592081Oryza sativaMusa acuminata9.5927.5389.7168forward
CNT30678866Oryza sativaTriticum urartu18.0520.4885.16128forward
CNT30370255Oryza sativaOryza glumipatula82.2391.52100583forward
CNT30101773Oryza sativaOryza rufipogon73.9163.5999.81524forward
CNT30576447Oryza sativaOryza barthii42.3110099.67300forward
CNT30116717Oryza sativaOryza nivara65.5956.57100465forward
CNT30604129Oryza sativaOryza punctata32.336.5294.32229forward

Expression of CNT30693422

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MHAIFSFFTLPHECRDAKSRGDRKLKPNTWDRSTSHAASNWILYNLYSHRNSTIISTS*

>peptide 2 (37 aa)
MQHRIGSFTTYIAIGIVQLYQHHKQGELIHGDPAMGD*

>peptide 3 (34 aa)
MSRCKIEGRQKIKTEHMGSQYVACSIELDPLQLI*

>peptide 4 (31 aa)
MSSRPFTATGWTATRDAIAAVNSREDAKLSR*

>peptide 5 (33 aa)
MAIRPWGTSSTVQRICMDGSDQEEGEAETRNLI*

Sequence

>CNT30693422
GTAAGTAGTAGTATCAAACTACTAAGGCCGGGTAATCATGCACGCCATTTTCAGTTTTTTCACACTACCACATGAATGTCGAGATGCAAAATCGAGGGGA
GACAGAAAATTAAAACCGAACACATGGGATCGCAGTACGTCGCATGCAGCATCGAATTGGATCCTTTACAACTTATATAGCCATAGGAATAGTACAATTA
TATCAACATCATAAACAGGGGGAATTAATCCATGGCGATCCGGCCATGGGGGACTAGCAGTACAGTACAGAGGATTTGCATGGATGGATCGGATCAAGAA
GAAGGTGAGGCAGAGACGAGGAATTTAATTTAGATCTTGCCGCGTGGGCCGGGCGTCGGCGGCAGCTGCGGGCCCTTCTTGATCGGAAGCAGGAACTTGA
GCAGGAGCCCCCTCTTGGTGAAGGGCCCCGCGAACGTCTCGAAGAACTTGCTCTGCATCGATCACCCACACGAATTATTCAGTAAATTAATCATCGAGCT
AAGTATATATTTTAGTCAGGTAATACTAACCTGGAGAGGGTTGTACGGCGACGGCGCGTCGGAGCCGTACAGGTCCCACTGCCCGGTGGTGTTGCCGATG
TCCTCGAGGCCCTTCACGGCGACAGGCTGGACGGCGACGAGGGACGCCATTGCTGCGGTGAATTCGCGGGAGGACGCAAAGCTGAGTAGATAGATGGATA
GATAGCCGG