« Back to Oryza sativa search


Detailed information on CNT30693384


BLAST search results

BLAST vs Swiss-Prot:
sp|P51431|R27AB_ORYSJ, E-value = 4e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674820Oryza sativaSetaria viridis34.232.2691.23171forward
CNT30178164Oryza sativaSecale cereale33.224.5696.39166forward
CNT30285916Oryza sativaTriticum aestivum33.227.1795.78166forward
CNT30553804Oryza sativaOryza glaberrima59.849.5996.66299forward
CNT30435581Oryza sativaAegilops tauschii33.233.1395.78166forward
CNT30656187Oryza sativaTriticum dicoccoides33.224.7495.78166forward
CNT30142281Oryza sativaLolium perenne34.222.2490.06171forward
CNT30719929Oryza sativaTriticum spelta33.228.5795.78166forward
CNT30332063Oryza sativaDioscorea rotundata22.427.3287.5112forward
CNT30576569Oryza sativaOryza barthii59.624.6396.64298forward
CNT30580001Oryza sativaEchinochloa crusgalli34.223.4292.4171forward
CNT30116662Oryza sativaOryza nivara59.813.24100299forward
CNT3050381Oryza sativaCucumis sativus1625.488580forward

Expression of CNT30693384

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVFPVRVFTKICILAAAGEGSPPRLRRREGWGEG

Sequence

>CNT30693384
GGAGAACAAAACGCATATAATCTGAATAACATGTAACCAGCAGCAGCTCATCTCAGCTCATGATAATAACAGATAAAAGGGAATGAAAAGCATCAGATCA
GAGCAAAGCGAGCAGCAGCAAGCATCAACCTAGGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGATCGAAGTGGTTGGCCA
TGAAGGTGCCCGCGCCGCAGTCGTTGTTGGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGAGCACGGCGAG
CTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACGAGCGTGATG
GTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGCGGGGGAGGGGTCGCCTCCGCGGCTGCGGCGGCGAGAGGGGTGGGGGGAAGGTG