Detailed information on CNT30693369


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AT41|NNJA4_ORYSJ, E-value = 8e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101834Oryza sativaOryza rufipogon10074.6399.67300forward
CNT30576403Oryza sativaOryza barthii9386.1199.64279forward

Expression of CNT30693369

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQQQHLMLAMTKDFLVAIFQSWIHFLRNL

>peptide 2 (35 aa)
LSFLAIVSLTDSCSFNFVFCSKRGHSLRGTAHCNS*

Sequence

>CNT30693369
CTTGAGTTTTCTTGCCATCGTCAGCTTGACTGATTCCTGCTCGTTCAACTTTGTCTTTTGCAGTAAAAGAGGACATAGCCTGAGAGGTACTGCCCATTGT
AACAGCTAGTCCATTGTTTGTAGGTGGCCTCAACTGCACTGTACATACTGGAGTGAAATTTGATGCATTGGTAATACTGGGAGGAGCTGAAACCTGAGAC
GGGACTTGATATGGCACAGCAACAACATTTGATGCTTGCAATGACAAAGGATTTCCTTGTGGCAATTTTCCAGAGCTGGATTCACTTCCTGAGAAACTTG