Detailed information on CNT30693281


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004636, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101200Oryza sativaOryza rufipogon94.2210099.84620forward
CNT30576128Oryza sativaOryza barthii69.610099.34458forward
CNT30117048Oryza sativaOryza nivara93.7797.7898.87617forward

Expression of CNT30693281

Peptides detected in this lncRNA

>peptide 1 (89 aa)
PVQFKSGSSLDYSRSSQHCSNHGFASICSSTSDPARSAGASASATASSSSSRAGAVAAELRLAETVVEVLVLRLACSHAAAAAAHQSVS*

>peptide 2 (44 aa)
MASPLSALAPLIPPAPQVPVPVPLLPPPLPVPVPSPLNSGLQKL*

Sequence

>CNT30693281
CCTGTGCAGTTTAAATCCGGGTCATCACTAGACTACTCGAGGTCGTCGCAGCATTGCAGCAACCATGGCTTCGCCTCTATCTGCTCTAGCACCTCTGATC
CCGCCCGCTCCGCAGGTGCCAGTGCCAGTGCCACTGCTTCCTCCTCCTCTTCCCGTGCCGGTGCCGTCGCCGCTGAACTCCGGCTTGCAGAAACTGTAGT
CGAGGTTCTTGTGCTGCGGTTGGCTTGTTCTCATGCTGCTGCTGCTGCTGCCCACCAAAGCGTGAGCTAGGATACCTCTTCTGTAGCAGCGGTTGCAGCC
TTGCAGGACTGAAGAAGGTGACGGGGCTGAGGAATCAGTCATATATCCGCTGCTGATCGATGCATTGACGCTGTCGCACCTGCAGGCTATACTCTGTTGC
GGATATATGATTTCTGTGTTTCTAAACCGTTAAGTCGTTAACTGTGTGCACTGTGGTGCTCCTTATAATTCTGTTCGTTTGAGTACCTGTGAATTGTGAT
GCATATCTGTGAATAAAAGGAGACGTGCTTGCTAGCGTAGTGTGAGGAGTGTTCATTGACTCATTGTTCAACACTTCAACTCCTAACACAAGTTCCTCTT
TATTGCTTATTTTTCACCCGTAAATAAATAAAACGCCATTATCTTGGTCTTATTAGAA