Detailed information on CNT30693247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672815Oryza sativaSetaria viridis12.3925.8193.1888forward
CNT30710762Oryza sativaGlycine max11.8324.7183.3384forward
CNT30592165Oryza sativaMusa acuminata13.3833.8192.6395forward
CNT30362130Oryza sativaSorghum bicolor2042.7788.03142forward
CNT3038429Oryza sativaCucumis melo11.2725.2483.7580forward
CNT30101150Oryza sativaOryza rufipogon38.5942.02100274forward
CNT30575951Oryza sativaOryza barthii15.3525.12100109forward
CNT30585175Oryza sativaEchinochloa crusgalli27.1840.1291.19193forward
CNT30113199Oryza sativaFicus carica12.9621.189.1392forward
CNT30333083Oryza sativaCynara cardunculus14.2327.3785.15101forward

Expression of CNT30693247

Peptides detected in this lncRNA

>peptide 1 (62 aa)
RVQRRERDPGLLVESPVELLHRQHVTDLAVLVRLGAVEALRAVDHRRPVLPAEPAGEPPEVA*

>peptide 2 (90 aa)
GYSDANVIPVSSWNLRWNSCIVSMLQILLSLYALAPSKLSAPSIIADPFCPRSPPASPRRSPSPALGGTLPARVLVLPVMEPRMMSRRDG*

Sequence

>CNT30693247
CCGGGTACAGCGACGCGAACGTGATCCCGGTCTCCTCGTGGAATCTCCGGTGGAACTCCTGCATCGTCAGCATGTTACAGATCTTGCTGTCCTTGTACGC
CTTGGCGCCGTCGAAGCTCTCCGCGCCGTCGATCATCGCCGACCCGTTCTGCCCGCGGAGCCCGCCGGCGAGCCCCCGGAGGTCGCCTAGCCCGGCCTTG
GGAGGGACGTTGCCGGCGAGGGTGTTGGTGTTGCCGGTGATGGAGCCGAGGATGATGAGCCGCCGCGACGGGTAGTCGGATTTCTTGAGGTCGTCGAGCA
TGAGGCGAGGTCCAGGTGCATGACGGTGTAGCTCCCCGCCGCCATCCCCGCCGCCTTCGCCGCCGTCGCCGCCTTCAGGAAGTCGCGGCACGCCATCACC
ACGTGCCACTTCCCCGTCTCCGCCAGCGCCTTCGCCGCCGCGAGCCCGAGCCCCGACGACGCGCCGGTGATCACCACCACCCCCTGCCGCAGCGTCTTCT
TCCCGTCCGCCTTCGACGTGCCCGCGCCGGGGCTCGCCACCGGCGCCGCCGGCGTCGCCACCGCCCTCACCACCAGCGACGGCTTCTTGGCCTTCTGGCT
CACGCTAAGGAACCCCGGCTCCTTCACCACCGCGCTCAAGTTACCCTGATCAGTCAGCCATTGGTGTGAGTGTTTGAGTTTGGAGTGAGCTCAAGTGTAC
TATGTTTCTG