CANTATAdb - search

Detailed information on CNT30693185

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XKE9|CLC1_ORYSJ, E-value = 5e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101576	Oryza sativa	Oryza rufipogon	78.76	72.12	99.78	445	forward

Expression of CNT30693185

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MTVMDGFLSLSFFPRFSMVAISCGMSSDIDFQYCLSASAWNFSWPATKIFSLSLLWTLFVSQFCILFS*

>peptide 2 (62 aa)
MWDELRYRLPVLLVCFGMEFLLASYENLLSFSVMDLVCLTVLYPLLIESLLKLFGFSKYLGP*

Sequence

>CNT30693185
TAGACAGATCCAGGGATTAGAAATAAAATGCATTTCCATATCTGCAGTCAAGGTTCGGGCGTTCCTGTAGAGCTACCATAAGTTACTCCGATGCTGCAGG
CTGCTCCTTCTCTGCTTCCGCAGGCTTCTTGGTTCCATTTGCTGGGGCTGGTGTGCCGTCTTTAGCACCATCCTTTGCGCCGTCTTTAGCAGCAGACGCT
GGTGGAGGTTGCATCATGTGCGGTGGAGGAGCGTGCTTCAGCTTCACTAAGATCTGGCGCATTCGTGAGAGGTCTGTCGGCTTGCCAGGCTTAGGGCCCT
GAATGACTGTGATGGATGGCTTCTTGTCCTTGTCCTTCTTTCCCCGCTTCTCAATGGTAGCTATTTCATGTGGGATGAGCTCCGATATCGACTTCCAGTA
CTGCTTGTCTGCTTCGGCATGGAATTTCTCCTGGCCAGCTACGAAAATCTTCTCTCTTTCTCTGTTATGGACCTTGTTTGTCTCACAGTTCTGTATCCTC
TTCTCATAGAAAGCCTTCTTAAACTCTTCGGCTTCAGCAAGTATCTGGGCCCGTAGCTCCTTCTC