CANTATAdb - search

Detailed information on CNT30693123

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000218, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596548	Oryza sativa	Oryza meridionalis	50.49	70.24	94.14	1279	reverse complement
CNT30369450	Oryza sativa	Oryza glumipatula	49.98	45.17	85.86	1266	forward
CNT30107694	Oryza sativa	Oryza longistaminata	53.97	91.74	88.73	1367	forward
CNT30102444	Oryza sativa	Oryza rufipogon	53.89	71.06	87.84	1365	forward
CNT30577878	Oryza sativa	Oryza barthii	53.57	20.3	87.55	1357	forward
CNT30115703	Oryza sativa	Oryza nivara	50.3	75.25	85.95	1274	forward

Expression of CNT30693123

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTKLMNISMSWIAGKVYIYYSMSISETIRIAMLTDIEHRDSLWHLG*

>peptide 2 (94 aa)
MLSSKGGTPVQWFFFKSSRRRQIYAEQGDYNIYRGVGKYIDYCALCVYCENLVGMTGVSQPVLSKNLGNARTPLAADNVTFRAYEDYSSWNRYH*

>peptide 3 (51 aa)
MNLDWNSTVEMVDFRVASTVPTDIRLPSTCEERASTTATSRMGTDLAKYVI*

Sequence

>CNT30693123
TTTTGGGGCTAAAAATCCTATTTATTTCCCTCCTTGTTTTCCTGCCTCATTCCCAAAAATATTTTGAGGAATTATATTAATTCCCTCCCATTTGAGTGCT
TTAATATTTAGACCACATTATTGCACTCAAATATTTAGGAAATATCTCTTTTGAAAGTTATCTCCAAAAATAGATTCATTTCAAAAGTTAGCCACCTAAA
TTTCCTTCCAAATATTAATTTGGATTCAAACTTCCTTCTTCAAATATCTTCCAAAATTGAAAAATAACTTCTATTCGCTTTTGGGCCAAATTTCTCAGAC
CGGCCCAAGTCGGCCCAGCCTCCCCCTCTCAGAGCCGACTTTTCCCTCGCCACAGTCGCCGCCGCCGTGCGCCATTTGTGCGCCGTCGTCCTCGGTCCTC
TCAACACCGCCCACAAACTCTCTGCCACCGCTGTCTTCTTTCCGTCGACGCGAAGGAACCGCCGCCCGACGTCAACTACACATCATCCCGCTGACGTCAA
CAGCAGACGAACCGCCATCATCAACCAATCAACGTACAGGGCCGGCGCCGTGTCCCTCTTCCTCACGCCACCGTCGCCGTGCCTTCTTCATCTACCACCG
GCGAACCGACCTTCGTGAACCGACGTCCGCCGCCTATAAATAGCCGGCGAGATCGCCCTCTTCTCCCCACATCAGAGCTTGAAGCTCTCTTCTCTCTCTC
CTGCCTTGACCGGCCACTGCCACCATCAGTCGATCTCCTCTTCCGCATCTCCACAAGCCAAGCCCTTGCGCCATCGTGTTTGCCTCGACGAGGTGAACCC
ATTTTTCCCCTTTCCCCTCTCTTTTAGCCACCACATCAAGCCACCACCGCCACTCCTTTTGTTGCCACGGTCGAGCTCCTGTCGTCGCCGTTCCGGCCAA
CTCCTTCACTCTCTCCGCCAGCCACCGCCCTCCCCAGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCGCAGCCAGTCAGCCACCGGAGCGCC
GTCGCCCCAACCGCCCTCCCTCTCCCTTCTATCGGCTGAAGGAAGAAGAAGACGAGAAGAAGGAGAGAGAGAGAAAAGGAAAAGAGCAGAGTCTATTATC
TTTTGGATGGCAACCTGTGATGTTTCGAGGATCAGATAATCAGGTTGCCTATCTCGGATTTGTTTGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTT
TGAGCATTATTATCCTATATTCTATATCCCTATTATTCCATGCATTAGCCATTCATGATTTTAAATGCATAACTTGAACACATAGCAAACCAGATATATA
TGCTAGATTTTGCTTAGCCATGCCTAGTTAGATTGCATAAAATATAATGAACTTAGATTGGAACAGTACGGTAGAAATGGTTGATTTCCGGGTGGCTAGT
ACTGTTCCAACCGACATAAGATTGCCAAGTACATGTGAAGAACGAGCGAGTACGACCGCAACTTCTAGAATGGGGACAGACTTAGCAAAGTATGTTATCT
AGCAAAGGTGGTACCCCTGTACAGTGGTTCTTCTTTAAGTCCTCGCGCAGGAGGCAAATTTACGCCGAGCAGGGCGATTATAATATTTACCGAGGCGTAG
GTAAATATATTGATTATTGCGCGCTGTGTGTGTATTGTGAAAACCTGGTTGGGATGACGGGGGTCTCTCAACCAGTTCTCTCTAAAAACCTCGGGAACGC
CAGAACTCCTCTCGCTGCTGATAACGTTACGTTCAGAGCGTATGAGGACTATAGTTCATGGAACAGGTACCACTAATGTTAGGAACTGAAAAGCTTTGCC
ATGACTAAGCTGATGAATATTAGCATGTCATGGATTGCGGGTAAAGTGTACATCTACTACAGTATGAGTATCTCTGAAACTATTCGAATAGCCATGCTCA
CGGATATTGAGCATCGGGACTCACTATGGCATCTTGGTTAGAAATATAACTCCAGATTTTATTAAATATTGTTGCATTTCAAAACATTATAGACTTTCTC
CTTCTACTTTCTCAGCTTTCTGCAATTAGATCTAGCTCTACTCAAATACTATTATTTCATACATTCATACTTGAATATAATAACTTGCTGAGTACGTTGT
ACTCACCCTTGCTTTAACCCCCTTCTTTCAGAATTAATTTGGAGTTCTTGCCGAAGCCGAGAGTTCAATCATATAAGTTAGTTTCATTTCAACCTAGTTC
TCAAGTCTAGATTAGTTAGATGGTTTAAGTCTATAGCAAAACATTAGGATTGAGTCATTCTATAGCTTCTGCTGTATTAGTTAGCCACAAGTTTGTAAAT
ACCCATATATTTTGTAATAACAACTCCTCTAGAGCCCTGTTCAAATGTATGCAATGAAGAGCCAGATTGTTGAACCTGTATCAATCTACTGATCCAGGGC
TTGATACAGTCTAAACATGTCGGTTTCCGAATCATTAGTTTTGGGACCCGACATTTCGAATGAAAAAGTCATCAACAACAAAGTTGTATAACTTATTAAT
ATCTATAATTTTTACTTTGGTCATTTTGCTATA