CANTATAdb - search

Detailed information on CNT30693116

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XKF3|PORA_ORYSJ, E-value = 1e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673262	Oryza sativa	Setaria viridis	11.91	26.55	92.55	94	forward
CNT30521311	Oryza sativa	Setaria italica	49.05	32.52	89.92	387	forward
CNT30553602	Oryza sativa	Oryza glaberrima	40.81	69.4	99.69	322	forward
CNT30658921	Oryza sativa	Triticum dicoccoides	24.97	29.01	85.28	197	forward
CNT30101305	Oryza sativa	Oryza rufipogon	35.11	58.69	100	277	forward

Expression of CNT30693116

Peptides detected in this lncRNA

>peptide 1 (90 aa)
GYSDANVIPVSSWNLRWNSCIVSMLQILLSLYALAPSKLSAPSIIADPFCPRSPPASPRRSPSPALGGTLPARVLVLPVMEPRMMSRRDG*

>peptide 2 (62 aa)
RVQRRERDPGLLVESPVELLHRQHVTDLAVLVRLGAVEALRAVDHRRPVLPAEPAGEPPEVA*

>peptide 3 (36 aa)
MRRARRKWPRWFTPTLISYPSAVNVGCRAVGRCMTV*

Sequence

>CNT30693116
CCGGGTACAGCGACGCGAACGTGATCCCGGTCTCCTCGTGGAATCTCCGGTGGAACTCCTGCATCGTCAGCATGTTACAGATCTTGCTGTCCTTGTACGC
CTTGGCGCCGTCGAAGCTCTCCGCGCCGTCGATCATCGCCGACCCGTTCTGCCCGCGGAGCCCGCCGGCGAGCCCCCGGAGGTCGCCTAGCCCGGCCTTG
GGAGGGACGTTGCCGGCGAGGGTGTTGGTGTTGCCGGTGATGGAGCCGAGGATGATGAGCCGCCGCGACGGGTAGTCGGATTTCTTGAGGTCGTCGAGCA
TGAGGCGGGCGAGGAGGAAGTGGCCCAGGTGGTTCACCCCGACGCTCATCTCGTACCCGTCGGCGGTGAACGTCGGCTGCCGCGCCGTCGGCCGGTGCAT
GACGGTGTAGCTCCCCGCCGCCATCCCCGCCGCCTTCGCCGCCGTCGCCGCCTTCAGGAAGTCGCGGCACGCCATCACCACGTGCCACTTCCCCGTCTCC
GCCAGCGCCTTCGCCGCCGCGAGCCCGAGCCCCGACGACGCGCCGGTGATCACCACCACCCCCTGCCGCAGCGTCTTCTTCCCGTCCGCCTTCGACGTGC
CCGCGCCGGGGCTCGCCACCGGCGCCGCCGGCGTCGCCACCGCCCTCACCACCAGCGACGGCTTCTTGGCCTTCTGGCTCACGCTAAGGAACCCCGGCTC
CTTCACCACCGCGCTCAAGTTACCCTGATCAGTCAGCCATTGGTGTGAGTGTTTGAGTTTGGAGTGAGCTCAAGTGTACTATGTTTCTG