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Detailed information on CNT30693056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553328Oryza sativaOryza glaberrima65.628.1899.27410forward
CNT30101480Oryza sativaOryza rufipogon77.1244.1100482forward

Expression of CNT30693056

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDRTPASSSSSLPVSSAQPRVRVAVPVDPGHLRLSHCAMIVTKTLGARPPKETS*

>peptide 2 (76 aa)
VIYTPYLIFSYSIFFIFHGSNTCVELVVAPGVQCAAAGSRRRSRRPRPSQTKPLRHDCHQDPRSKTTEGNELRHRR*

>peptide 3 (50 aa)
NLHTIPNIFIFNILHFPWIEHLRRARRRSRCPVRSRGFASPFPSTQAISD*

Sequence

>CNT30693056
GTAATCTACACACCATACCTAATATTTTCATATTCAATATTCTTCATTTTCCATGGATCGAACACCTGCGTCGAGCTCGTCGTCGCTCCCGGTGTCCAGT
GCGCAGCCGCGGGTTCGCGTCGCCGTTCCCGTCGACCCAGGCCATCTCAGACTAAGCCACTGCGCCATGATTGTCACCAAGACCCTAGGAGCAAGACCAC
CGAAGGAAACGAGCTGAGGCACCGTCGTTAAAGAGATCGAGCCTTTCTTCTTCAACTCCGGCCGCCGGCGTCAATCTTCAATTCCCGCTGCTCTGCTCTC
CATCTACCGGACCGTGCTGTCACCGTGAAGCCGACATCATCCTCCGCCTTCAAGCCGTTCCGCGAGCTGCTGCTGCCGTCCAAGCCTCGCCAACACCGTG
CTTCTGACCGATGATTGCTTAGACGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCAGTTGCAAGGCAAGTCCCACCTCCCTCTCTTTAATCACTTTGA
ACCTATGTTTTGGAGGTTATTGAAAATGTTTGCAAATCTTGCATGTCAATTGTACAGTAATAAATTAAAATTTTGTTAAACTTGTTAGACAAACTCCTAT
TATTTGCATTATCACCTTAACCCCA