CANTATAdb - search

Detailed information on CNT30693027

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 6e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676635	Oryza sativa	Setaria viridis	32.22	83.33	87.59	290	forward
CNT30631438	Oryza sativa	Vigna unguiculata	29.78	40.48	82.84	268	forward
CNT30487971	Oryza sativa	Olea europaea	32.11	55.58	80.97	289	forward
CNT30287617	Oryza sativa	Triticum aestivum	37.22	58.88	89.25	335	forward
CNT30393350	Oryza sativa	Triticum turgidum	38.22	34.37	79.94	344	forward
CNT30553308	Oryza sativa	Oryza glaberrima	22.11	45.12	100	199	forward
CNT30144776	Oryza sativa	Medicago truncatula	23.56	16.15	82.55	212	forward
CNT30441093	Oryza sativa	Aegilops tauschii	27.89	49.41	78.88	251	forward
CNT30254596	Oryza sativa	Avena sativa	49.44	33.56	85.17	445	forward
CNT30658759	Oryza sativa	Triticum dicoccoides	42.56	64.7	90.08	383	forward
CNT30311914	Oryza sativa	Camelina sativa	39.22	57.12	78.75	353	forward
CNT3062430	Oryza sativa	Arabidopsis lyrata	38.89	30.36	78.29	350	forward
CNT30717839	Oryza sativa	Malus domestica golden	33.44	59.25	79.4	301	forward
CNT30685178	Oryza sativa	Triticum urartu	24.22	26.85	81.65	218	forward
CNT30354596	Oryza sativa	Lactuca sativa	24.89	20.18	80.36	224	forward
CNT3053264	Oryza sativa	Amborella trichopoda	21.56	30.99	81.44	194	forward
CNT30150411	Oryza sativa	Brachypodium distachyon	37.11	66.14	85.33	334	forward
CNT30101573	Oryza sativa	Oryza rufipogon	33.33	35.42	100	300	forward
CNT30581271	Oryza sativa	Echinochloa crusgalli	16.22	27.55	82.88	146	forward
CNT30498115	Oryza sativa	Digitaria exilis	43.22	49.05	85.6	389	forward
CNT30116632	Oryza sativa	Oryza nivara	13.11	30.81	100	118	forward
CNT30558331	Oryza sativa	Panicum hallii	52.11	56.64	85.5	469	forward

Expression of CNT30693027

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKGEFMPSSFTIMSAPAERREKAIIPERRYYPSIRHSEQVPVVPEHHYHR*

>peptide 2 (42 aa)
LQLTIDKPNKNHSYFRSLYINAAGWPGCRSIYLHFKVSYSHV*

>peptide 3 (57 aa)
MSFALSLSNTSLSIISAISLTSSLVSCRNTIISSNLFKNSGRKYCFSSSVTKLLILL*

Sequence

>CNT30693027
GTTGCAACTGACAATTGACAAACCAAACAAAAATCACTCTTATTTCAGATCATTATATATTAATGCTGCTGGGTGGCCAGGATGCCGTAGCATTTACCTA
CACTTCAAAGTAAGTTACAGCCATGTGTAAAAAGTATTGGAAGCCATCTGGTGCGAAGTAATGTACAGTTTGTTTGCTAAATGCATCTCTGTTGATTCAT
TTCCATAACATTCCTACTGCCTCTGTTGGAAAAAAAGAGGAAAAGTGAAAGCACCTAAATGAAGGGAGAATTTATGCCATCTAGTTTTACCATCATGAGC
GCCCCAGCTGAGAGAAGAGAAAAGGCCATAATTCCAGAACGACGATATTATCCTTCAATTAGACACTCAGAGCAGGTGCCAGTGGTTCCGGAACACCACT
ACCACCGTTAAGAACTATCACCTTGCCCTCTGAATCCACATCAACAATAGCAGAGTCACCTTCCTTGACCTCGCCAGCCAACATCTTCTCCGCCAAGCTG
TCCTCCAGAAGCCTCATAATAGCACGCCGCAGAGGCCTGGCACCATAGCTTGGGTTGTAACCTTCGTCGACAACTCTATCCCGGAACTTCTCTGTCACCT
GGAGGTCGATGTCCTTTGCCTTGAGCCTGTCAAACACTTCTTTGAGCATAATATCAGCAATCTCCTTAACCTCCAGCTTGGTAAGCTGCCGGAACACAAT
CATCTCGTCCAATCTGTTTAAGAACTCAGGTCGGAAGTACTGCTTCAGCTCTTCAGTCACCAAGCTCTTAATCCTATTGTAGCTGGTGTCTTTCTCATCA
TAGTCAAGGTCAAATCCAATCTTCCGTCCTCCCTTCTCAATGACACTGCTTCCAACATTTGATGTCATGATCAACAGTGTGTTCTTGAAATCAACAGTCC