Detailed information on CNT30693017


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01548|PER2_HORVU, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30290573Oryza sativaTriticum aestivum5.6226.4185.3375forward
CNT30221717Oryza sativaHordeum vulgare7.1238.4684.2195forward
CNT30553544Oryza sativaOryza glaberrima23.9945.33100320forward
CNT30342802Oryza sativaEragrostis tef10.7223.490.21143forward
CNT30596085Oryza sativaOryza meridionalis30.5825.5696.57408forward
CNT30370179Oryza sativaOryza glumipatula8.4732.75100113reverse complement
CNT30101572Oryza sativaOryza rufipogon56.8248.01100758forward

Expression of CNT30693017

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMMIHLTCSYSVPTEESSSNFTFYEAKPF*

>peptide 2 (39 aa)
METLILGLCCDKDSCDDVALTDDDDTFDMQLLCPDRGIE*

>peptide 3 (33 aa)
MHGNQTPRADGILLIIITSTKHKHKTITNYSIS*

>peptide 4 (56 aa)
MVVGRACGKQSWKKMRTRPATTGSPVVTTAAQRAAKRPEISSTTIPSLDAIAQHSS*

>peptide 5 (48 aa)
MMGLEPSKRSLKLPQWPSPMVCAPDSATRSVLSRFRSLNAWMSVGTSK*

>peptide 6 (60 aa)
MASRVASVVMSAQDTLAPQAECTAARMSSMSFSADGRSVWLGISPSSLWEPVRRTDASHP*

Sequence

>CNT30693017
TTTGTTTTTATCTGATTAAGTGTCGTGCTATGCCGAACGATGGAAACATTAATTTTGGGTTTATGCTGTGACAAAGACAGTTGTGATGATGTAGCACTAA
CTGATGATGATGATACATTTGACATGCAGTTACTCTGTCCCGACCGAGGAATCGAGTAGTAACTTTACTTTTTATGAAGCAAAACCATTCTAACTAAGCA
GAGAATGCATGGAAACCAAACACCACGCGCAGATGGCATCCTCTTAATTATTATTACTAGCACAAAACATAAACATAAAACGATCACTAATTACTCCATA
AGTTAATTAGGCGTCGGCGGCGAAGCCTTGGTCGGAGGAGCGGCGGTTGGGAGCGGCGCAGTTGTTGCGGATCTCGCCGGCGTTGCCGGTGAGGACGTCC
ATCTGGCTCATCTTGACCATGGAGCGTGCGAACTGGTCGAAGTAGTACTTGTTGTCGAAGGCGTTGGGCGTGCGGACGTCCAGCTCCTGCGTGACCGAGT
TCACCGGCACGTCCTTGGCGCACTTGGCCTGCAGCTTCTTCACCAGCACAGGGTCCATGATGGGCTTGGAGCCATCGAAGCGGTCGTTGAAGCTGCCGCA
GTGGCCTAGTCCGATGGTGTGCGCGCCGGACAGCGCCACCAGGTCCGTCTTGTCCAGGTTTCGGTCCTTGAACGCCTGGATGAGCGTGGGCACGTCGAAG
TAGGGCCCGCCGGACTGCCATGTAAATGTAATTAAATTAAATATGTTAATTTGTTCAGTTCTTGAGTAAAAATCCCGACTGTTCATTATTAATTAAGAAT
TAGACGTACGGCGACGATGGCGTCACGCGTGGCGAGCGTGGTGATGTCGGCGCAGGACACCTTGGCGCCGCAGGCGGAGTGTACGGCGGCGCGGATGTCC
TCGATGAGCTTCAGCGCCGACGGCCGCAGCGTCTGGTTGGGTATCTCACCCAGCTCGCTTTGGGAACCCGTCAGGAGGACCGACGCGTCGCACCCCTGAA
CACTTAATTAATTATGTTAATATACTACTGTAGTTACTAAAACTCGGTATTTAATTTGTTTTTTTTTTATGTATTGCCATCTGTAAGAAGGAGGCACCAT
GCATCAACCGAACCGGCAACTACTGGAGTAAAATGGTAGTAGGACGTGCCTGCGGGAAGCAGTCGTGGAAGAAGATGCGGACGAGGCCGGCGACGACGGG
TTCGCCGGTGGTCACCACGGCCGCGCAACGGGCAGCAAAGAGGCCCGAGATCAGTAGCACAACCATACCCAGCTTGGACGCCATTGCTCAACACTCTAGC
TAACAAAGATCGATCACTCTCAGCTCGACCTCTG