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Detailed information on CNT30692989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000756, E-value = 8e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101334Oryza sativaOryza rufipogon43.5857.89100319forward

Expression of CNT30692989

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGYNLVSLDLINWIGSAKCYMYNCLDMLRNISLLM

>peptide 2 (33 aa)
MLNPFKTIVLFQLMHYFRMSSGGEPFPLINGRR*

>peptide 3 (39 aa)
AGQAESEPPPSAADSALLGRPRVRLVEEKYSPPYPLPFP*

Sequence

>CNT30692989
GGCCGGCCAAGCCGAGTCCGAGCCGCCGCCTAGCGCCGCCGATTCCGCCCTTCTCGGTCGACCTCGAGTCCGATTAGTTGAGGAGAAATACTCTCCTCCT
TATCCTCTTCCTTTCCCCTAAAGTCTCAGAGACTAATTTCTCCCGGATAAACCAAATCGAGTCCGTTTGAGTTTATCTCTCCAAACTAACCTGAAGATTT
TCCGGCTTCGATTCCTCTCGGTTGGAGCCCGATCTCTTCAATCCAACCTATATATAGCATCCCCTTGGCGTCCTCTTTCATTTGCCTCAACTCCCGAGCC
CTCTCGTCCCTTGTAGTGTCGCCGCCGCGCCGCCCTAGCCGCCGCCGTCGCCGGTCGCCGCTCAGCCGCGCCGGCCACCGTTCGTCGTCGTCCGTCGCGT
TTTCTTGCACCGTTTCCGACGTTCCGGAGGAGAGCATTTCCGTCGAGGAAGGTTCAGAAGTGTTTGCGGAAGCTCAAGGCAAGTCACACAGATCCCAAAC
AACCCTTTGAGCATGTTGAACCCGTTTAAAACTATTGTTTTATTTCAACTTATGCATTATTTTCGAATGTCATCGGGTGGTGAGCCTTTCCCATTAATTA
ATGGCCGAAGATGACTTTATTTTCCTATGGGTTATAATTTGGTTAGCTTGGACCTTATAAATTGGATTGGTTCAGCTAAATGCTATATGTATAATTGCTT
AGATATGCTTAGAAACATTAGCTTATTAATGG