Detailed information on CNT30692932


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553335Oryza sativaOryza glaberrima74.0590.9899.52625forward
CNT30596075Oryza sativaOryza meridionalis29.6246.8295.2250forward
CNT30370058Oryza sativaOryza glumipatula70.0210099.49591forward
CNT30109643Oryza sativaOryza longistaminata77.3710095.1653forward
CNT30101323Oryza sativaOryza rufipogon69.6794.2399.83588forward
CNT30576161Oryza sativaOryza barthii74.7691.5899.52631forward

Expression of CNT30692932

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MHLHLIKLTPSLFCLRVCCAKPAIKSLATPVREPLGDQRGRGSGLLPPGLLSSIQV*

>peptide 2 (36 aa)
KGQALCCYASMISPYESELRAWQYGMAAPMLLQGAS*

>peptide 3 (36 aa)
MWQAASVYLFFVCSCCLIVLYLICTVVPSSLRSCRH*

>peptide 4 (35 aa)
KRTSPMLLCIHDISLRVRAQGMAIWHGSAHAPAGG*

>peptide 5 (34 aa)
MHACANDVYRFQEMKCSLLLGQVASSVGWSHVHC*

>peptide 6 (34 aa)
MGHVASSFCLFIFRLFMLFDCSLLNLYGCTQLLT*

>peptide 7 (29 aa)
MRKHGYLALLLHALVLISRCMHGILVNPD*

Sequence

>CNT30692932
AAAAGGACAAGCCCTATGCTGCTATGCATCCATGATATCTCCCTACGAGTCAGAGCTCAGGGCATGGCAATATGGCATGGCAGCGCCCATGCTCCTGCAG
GGGGCTAGCTAGAGAGAAAACGACGAGATAGCTAGCTAGCCATGCATGCATCTTCACCTGATTAAACTAACCCCATCACTCTTCTGCCTGCGTGTGTGCT
GTGCAAAGCCGGCTATAAAATCACTTGCAACTCCAGTGCGAGAGCCCTTGGGCGACCAGAGAGGGAGAGGTTCCGGCCTGCTACCTCCTGGTCTCCTCTC
TTCTATCCAAGTTTGAGAAGGCCAGAGATATATGCATGCTTGCTTGTATCATGTGAGTTCATGCGCAAGCATGGATATCTAGCTCTATTACTGCATGCAT
TGGTGTTAATTAGTAGGTGCATGCATGGCATCCTCGTCAATCCTGATTGATGTTTTGAACAACTGGTTATGTCTTTCACTTCATGCACGCGTGCGCAAAT
GATGTATATAGGTTTCAGGAGATGAAGTGCTCACTACTGCTCGGGCAGGTAGCTAGCAGTGTCGGCTGGAGCCATGTACATTGCTGATAGAGGCCGGCGA
GCGGCATTGTTGCCGGCTGGAGAGAGGCTGGCCTTCACGCGGTGAACCAAGCTAGGATAGAAGAACAAAAAATGGGTCATGTGGCAAGCAGCTTCTGTTT
ATTTATTTTTCGTTTGTTCATGCTGTTTGATTGTTCTCTACTTAATTTGTACGGTTGTACCCAGCTCCTTACGTAGTTGCAGGCATTAACTACGTACTCT
GCGGTGTTGAAATCTATGGAACTTCGTTTACGAGCCGAGCTTCA