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Detailed information on CNT30692886


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004359, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576100Oryza sativaOryza barthii42.8710097.7391forward
CNT30604423Oryza sativaOryza punctata22.9215.4485.65209forward

Expression of CNT30692886

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MWSPPSSGLTGTSQAEVDWQAKGLAMSPIFFSRGVGCFIMFV*

>peptide 2 (43 aa)
MKTHACQFDEWIEPLPSSRSSTPSPDHLLHRCRCPDFPAPRSR*

>peptide 3 (49 aa)
MHVNSMSGSSRCRLPGALHRRRTIFFTAAAVQTFPRLVQDDCLNGEEVI*

>peptide 4 (60 aa)
FSLKSSSKTLKNPRQWRSKCGDRLPSSSPPVAVAIVDSASSGEPLSDYSRIHIPGTSITP*

Sequence

>CNT30692886
TTCTCCTTGAAGTCTTCCTCAAAAACCCTAAAAAATCCTAGGCAATGGCGCAGCAAGTGCGGAGATCGGCTACCGTCGTCTTCACCTCCGGTCGCCGTCG
CCATTGTCGATTCCGCCTCCTCCGGTGAGCCATTGTCCGATTATTCGCGTATACACATCCCTGGGACCTCAATAACCCCATGAAAACACATGCATGTCAA
TTCGATGAGTGGATCGAGCCGTTGCCGTCTTCCCGGAGCTCTACACCGTCGCCGGACCATCTTCTTCACCGCTGCCGCTGTCCAGACTTTCCCGCGCCTC
GTTCAAGATGATTGCTTAAATGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGGTTTTAGACTTAGTCTTTGAGTGATGCGGGTAATCAA
CTGCTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCTGTGTGCTTGTGGATTGGGTAGACAAGCTTCCGCTGTTCTATATATTTATTTGGCC
GGTCGGCCAATGTAACTAAAGTAGATGTAGTTTATAATCGCTTTCATCTTATTTGTGTTTGCTATGTATAATCATGCTTGAGATGAAAGTGTGAATCTAG
TGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGATGTAGATCTTTAGCCATTTTTGTCAAGTCTCCTGAATGTGTAACA
CATGTGGTCACCGCCTTCGAGTGGTTTGACGGGCACATCTCAGGCTGAAGTTGACTGGCAGGCTAAAGGCCTAGCAATGTCTCCAATATTCTTCTCTCGA
GGCGTTGGATGTTTCATTATGTTTGTTTGATGACTTGAATTATTCACTTCATCCCTCAAATATAATATAATGTAAGGTCTAGAAAGCCTACGACAATACT
GCCATTTGAGAC