CANTATAdb - search

Detailed information on CNT30692830

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101554	Oryza sativa	Oryza rufipogon	71.68	85.78	100	362	forward

Expression of CNT30692830

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVLMKLEEEESSSRSSGRMWGRQLVREEM*

>peptide 2 (46 aa)
LTVHARVPKTKGLHLLRCIHQAQNDVASWLAKLREVEEGQQRERQK*

Sequence

>CNT30692830
CTTACGGTTCATGCCCGAGTTCCCAAAACTAAAGGACTCCATCTTCTCCGTTGCATCCATCAAGCTCAAAACGACGTAGCTTCCTGGTTGGCAAAGTTGA
GAGAAGTGGAGGAAGGTCAGCAGAGAGAAAGGCAGAAGTAAAGCAAAGCTGAAGAAACAAGAAGCAGAGGCATCACACAAGGATGATTAAAACTGATTCT
GGTGAGGAACAAATTAACATACAAGCAAAGTGGACTTCTGTTTGATTTGGCTATAGAGGTGGAAAGAATTGGGGTTGGATGAGATTCAGTATATGGTAGA
GGATCCGATATGGTGTTAATGAAGCTAGAAGAAGAAGAAAGCAGTAGTCGATCGAGCGGTCGAATGTGGGGACGACAATTGGTCAGGGAAGAGATGTAAG
GCGATGAGCTAGCTGATGATCGTGAGAGAGAGTGGTGAACCGGAAATTATAAGTCTAAATTTTTAAAGCCAAGCCGAATTATAGTCCAAATTTTATTTAG
TTCCC