Detailed information on CNT30692810


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENJ7|PSBA_ORYNI, E-value = 0.0

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530127Oryza sativaEucalyptus grandis17.4168.9790.45220forward
CNT30378681Oryza sativaArabidopsis thaliana51.567.691.86651forward
CNT3021612Oryza sativaCitrullus lanatus7.5947.2995.8396forward
CNT30196112Oryza sativaPisum sativum32.9990.0688.73417forward
CNT3095573Oryza sativaSolanum tuberosum7.0422.0387.6489forward
CNT30300480Oryza sativaTriticum aestivum100.7197.1895.761273forward
CNT30391503Oryza sativaTriticum turgidum27.697096350forward
CNT3089384Oryza sativaVigna radiata44.5469.3390.76563forward
CNT30540531Oryza sativaBrassica napus84.4155.0992.131067forward
CNT30555706Oryza sativaOryza glaberrima54.1910099.27685forward
CNT30145113Oryza sativaMedicago truncatula2596.3492.09316forward
CNT3059907Oryza sativaArabidopsis lyrata16.8541.8590.61213forward
CNT30598581Oryza sativaFraxinus excelsior23.584.1484.51297forward
CNT30605440Oryza sativaGossypium raimondii26.5882.1589.58336forward
CNT30655381Oryza sativaRosa chinensis30.9373.0892.84391forward
CNT30627899Oryza sativaDaucus carota44.7844.690.99566forward
CNT30360185Oryza sativaLactuca sativa57.12100.789.34722forward
CNT30484609Oryza sativaChara braunii10.2833.0883.85130forward
CNT3058320Oryza sativaAmborella trichopoda50.9592.6689.44644forward
CNT30102095Oryza sativaOryza rufipogon10.9258.9799.28138forward
CNT30117690Oryza sativaOryza nivara18.3572.27100232forward
CNT3049694Oryza sativaCucumis sativus8.4736.0389.72107forward

Expression of CNT30692810

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSGHNIISLFLLTKSVTLISRFVFSGFPDQTRGYQGTMHSTE*

>peptide 2 (62 aa)
MQQQSKDAYPDGNSVPTHDPYNKLHQVRSVEQLAHKDHHCITTHQQMQLPKLGKSAIRSPQK*

>peptide 3 (67 aa)
MISAQVLITRPWLSTTDWLKLNPFRLKAIVLIPKAVNQIPTTGQAAKKKCKERELLKLAYWKINRPK*

Sequence

>CNT30692810
AAAAATTGCTATATGTTAGCAGAAAAGCCTTATCCATTAAGAGATGGAACTTCAAGAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCA
TTACTTCCATACCAAGATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAATCCGTT
TAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA
CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATT
CGTTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTG
AAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA
CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCC
ACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTC
CCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA
CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATC
CGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAGATC
TTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAAAGATAATAGAAGGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGT
AAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAAAGATAATAG