Detailed information on CNT30692588


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101114Oryza sativaOryza rufipogon1005.57100429reverse complement
CNT30576095Oryza sativaOryza barthii81.1240.8999.43348reverse complement

Expression of CNT30692588

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVGMGTWRKPKPLVSISDNRGGNLAECFPMPPIPIILNHSFLFLLTCSIVSAEKTK

>peptide 2 (36 aa)
MIFLMPPIPIVLRCSFLLLSANTNLLEKTKCIHVHI*

>peptide 3 (32 aa)
MYPCPHLDALAVSREEEERGSKNGWNGNMEET*

Sequence

>CNT30692588
GAGGGTGAGCCAGGAAGAGGAAGAGAGACTCTAAGAGCAGTAGGAATGGGAACATGAAGGAAAGCCAAATTAAGCTCTAACCTCTGGTATTGGAGATTTG
GTCTGATGATTTTCCTGATGCCTCCCATTCCTATAGTTCTTAGGTGCTCGTTCCTCTTACTTTCAGCTAACACCAATTTACTAGAGAAAACAAAATGTAT
CCATGTCCACATTTAGATGCCTTGGCAGTGAGTCGGGAAGAGGAAGAAAGAGGGTCTAAGAATGGTTGGAATGGGAACATGGAGGAAACCTAAACCTTTA
GTTTCCATCTCTGACAATAGAGGTGGAAATTTGGCTGAGTGTTTCCCAATGCCTCCCATTCCTATTATTCTTAATCACTCCTTCCTCTTCCTTTTGACTT
GCTCAATTGTTTCCGCAGAGAAAACAAAA