Detailed information on CNT30692496


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101780Oryza sativaOryza rufipogon7.3867.9796.15208forward
CNT30577513Oryza sativaOryza barthii8.1355.8596.07229reverse complement

Expression of CNT30692496

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MAPHSAGTGKAEKLKRLPRFLTVDMLGVCMLQKQAEASTGTEKLGHLNSSNQAHHHAFFFWRKIIMLFNQHHNCLELPQW*

>peptide 2 (36 aa)
MTITLCKELWSWRDLKRGLQCFIVPKSPFNLIGSWI*

>peptide 3 (35 aa)
MISFLPCSFKFRNLNSACNLNFAMMSFVISSSPLF*

>peptide 4 (49 aa)
MHSSNGARNDPIIYGYRINPQAHIYTIVAFHLEVFECIVFLIPREDNKSE

>peptide 5 (40 aa)
MTPIGRFQDSEADTDSRPMMTSGLPNFVVNTITLCKELWS*

>peptide 6 (53 aa)
MTNSLRRFNFSSMLEATFYILGESRKISLPFFFQSILQHIFSLMAMKIIIPGS*

>peptide 7 (50 aa)
MELMEGLEERIAVVYSAQIASHDHNFVQGIVELEGLEERIAMFYSAQIAI*

>peptide 8 (74 aa)
MREPTISGKVGGNQTNEFSGSRRIHMRATLKGINNMQRELLHSVAWVACIVGWEQIRWVGLVECDRLDSPGKDE*

>peptide 9 (61 aa)
MADSPSPAPFRIHIREKRNDHRPLTPMSFPLPASSQSLHGSTLRRDWESRKIKAASQVLDC*

>peptide 10 (32 aa)
MISTELIENKGRVNSAIVHRRFDDSHRPIPRL*

>peptide 11 (30 aa)
MVALQLGCLRSTFFFLDLWLKLTAPHLNNC*

Sequence

>CNT30692496
ATCCTTTTGAGATGCTCGGTGAGAGAGTTTCGGTGTGAGTTTGGAGTGTGTTTGCCTGAGAGGCTTTTGTATTAGGATTAGTTTGGAGTGTGTTTATCCG
AGAGATTTTAAGTTTGTGTTAATGTTCCTCTGAAGGTGTATGTTGCTCCTAGTTGAGCGGTTATTTTGCATCACCTATGAATGAAATGATTTGAATGATT
TCGTTTTTGCCTTGTTCATTTAAATTCCGCAATTTAAATTCTGCTTGTAATTTGAACTTTGCGATGATGAGTTTTGTTATCTCCTCCTCACCTCTCTTCT
AGTTTGGGAAATTCCTTTTCTCTTTCTCTTCTAGTTTTGGGAATTTCTTTCTCCTTTTCTAGATCCGGCTTCTCTAATAGCCGCGGTTCTAGTAAGGATT
TTAAGAAATCCGGCTTGATGAGTATTTTCGGGGGCAAGATTTGAATTGCTATATTCACCCCCTCTCTATAGCTGTTCTTGGTCTTTCAAAATCATCCCCA
CTACCTGGAATTTTATCATCCCCACTACCTGGAATTTTCTGCTTCTAGTGCTTCCACGTCATCAGTTTTTCCATAACCGTTCAATCGACACCGCATCCTG
CATCCGCACCGTCCCGCATCTCGCTCCGCCGGGCCCATTGCATCGCTCCCCACCACATCGCGCATCTCGCTCCGCCGGCTCCACACCCCACCGGATTGCT
CCCCACCGCATCGCTCCTCTCTTGCACGAGCGCCCGCATCGGCTTCCTCTCCCGCATCTCGCTCCGCCTCCCCCACCGCATCCCTCTCACTGCGCGCCGT
GGGGACAGGCGCTGCGGCGCCGCGCTGCATCGCGCTCGCCTGCCTCCCTACATCGCACTCGCTCCCCACCGCACCATCCGCCTCCCGTGCAGCATTTCGC
TGGACGCCGTGGGGACAAGCGCTGCGGCGTCGTGCCGCATTGCGCTCGCCTGCCCCCCTGCGACCCACTCTGCCCCTAGCGATGGCTGACTCTCCTTCTC
CTGCGCCGTTCCGAATCCACATCCGAGAGAAGCGAAACGACCACCGCCCACTAACACCTATGTCGTTTCCGCTCCCTGCTTCCTCTCAGTCTCTTCATGG
CTCCACACTCCGCCGGGACTGGGAAAGCCGAAAAATTAAAGCGGCTTCCCAGGTTCTTGACTGTTGACATGCTCGGTGTTTGCATGCTACAAAAACAAGC
CGAAGCAAGCACAGGAACTGAAAAGCTAGGTCACCTTAATAGCAGCAATCAAGCCCATCATCATGCTTTTTTTTTTTGGAGAAAGATTATCATGCTTTTT
AATCAACACCACAACTGTTTAGAGCTTCCTCAATGGTAGCCTTGCAGTTGGGCTGTTTGCGATCGACTTTTTTTTTTTTGGATCTTTGGTTGAAATTGAC
AGCTCCCCACCTCAACAACTGCTGAATCTGTTGGAAATTTCGGCAGCTTCATCGTCAAATCACGTCAATATGTGCTAGCCTTTCAACAGAAGTTCCTTTA
TCGTCTCGATCCAGAAACAGATGACAAACAGTCTACGGAGGTTTAATTTTTCGTCAATGCTTGAAGCGACCTTCTACATCCTTGGTGAATCAAGAAAGAT
CAGCCTCCCCTTTTTCTTTCAATCAATTCTCCAGCACATCTTTTCCCTCATGGCAATGAAGATTATTATACCTGGTTCTTAATCTTCCTACTTCATTTGT
TTGTGACTAATGAGAATTATGTTGTCCTTACTCTATTTTTGCCCATTTTTTAACCATCAGTTCTTTTTATTCTAATGGCGCGATGATATCAACTGAATTG
ATCGAGAACAAAGGAAGAGTGAACAGTGCAATAGTGCACAGGCGATTTGATGACTCCCATCGGCCGATTCCAAGACTCTGAAGCCGATACTGACTCTAGG
CCGATGATGACTTCGGGCTTGCCAAATTTTGTTGTTAACACCATCACTTTGTGCAAGGAATTATGGAGTTAATGGAGGGACTTGAAGAGAGGATTGCAGT
GGTTTATAGTGCCCAAATCGCATCTCATGACCATAACTTTGTGCAAGGAATTGTGGAGTTGGAGGGACTTGAAGAGAGGATTGCAATGTTTTATAGTGCC
CAAATCGCCATTTAATCTAATCGGAAGCTGGATATAATGGCAGTTCAGTAATCGGTAGGACTATTTAGGAGGAGTTTCTGCAGAGTGCAGGATGAAATTA
TGAGGGAACCAACAATTTCTGGCAAAGTGGGAGGTAATCAAACAAATGAATTTAGTGGGAGCCGGAGGATTCACATGCGTGCAACATTGAAAGGGATCAA
TAATATGCAGCGTGAATTGTTACATAGTGTTGCATGGGTCGCATGCATCGTCGGATGGGAACAAATCAGATGGGTTGGGTTGGTTGAGTGTGATAGGCTG
GATTCACCCGGCAAGGATGAATGACACAGATTAGAAGCAAGGAGCCAAGAAAGACAGACAAAATCAAGAAACACAAAACCAAATGGTGGATCACCTTGTG
ACTGAAAAATAAGCATTACTTGTATAGTTGCATAGGATGCATGGAACGCTAAGAGCTTAATTGTTCTTAATTGTTAATCAGTTTCCTTTTATGATAGTGT
AACAGTAACACAAGTTTATTTTTTCTTGTCAGACTGGTGGTATTTCTCAACGACATTACTAGAAATATGCATTCTAGCAATGGCGCCAGAAATGATCCTA
TTATTTATGGTTATAGAATTAATCCGCAAGCGCACATATATACCATTGTAGCATTTCACTTGGAAGTATTCGAATGTATCGTATTTTTAATCCCAAGGGA
AGATAATAAGAGTGAAC