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Detailed information on CNT30692482


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099742Oryza sativaOryza rufipogon14.0225.689.86138forward
CNT30576162Oryza sativaOryza barthii15.3525.7782.78151forward

Expression of CNT30692482

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLRISIRRRNEVFCFGFEFVAVSVIQTFSVTEGMEVHESTGTENCIGSLVP*

>peptide 2 (32 aa)
MPAADDQLILPFLNSLSPERSVDVENLNKKKK*

Sequence

>CNT30692482
AAAAGGAAAGAAAAAAAAGACGGTCAGCGATGAGAGGCGAGAAATTAAGGGGTGAAGGCCGGTGAGAAGCGATGGGTCTCCACCGGGCATCCCTCTCGCC
ATATCCGCCGGCGGCGAGCGGATCCGGTGGTGGAGAGAGCTTGTGGCGCTAGCAGGATCCAGTCGAGCTCAAGGAGAAGGAGAAGAGATGGTGACCCCTC
CCAGCGACAGCGAGAAGCGGGCCTGACTCGCGAGAAATTTGGAATGCCTGGTGATCATATTAGTTTGGAGGAGGTCGCGGAGTATGAAAATGTGATAACC
AAGGAGTTTAGAAGGATAGAAATTCTATAATGATTTTCCTTTTGAGGATATATTCTTGAAAACTAGATGTATTGATACTTTAGAGTTAAAAAAAGTGAGA
CTTCTTGTGATTTTGTAATTGGGAATAAAAACAGATGTATTAACTGTGTAAGTTCCCCATGCACTTTTCGTTTTATCTGACTCAGTGCCATGTTACTCTT
TGATTCACTGAACTAATTAGAGACCTCCTTTTTAGGGCCAATTTTAGGATAAACTAGGACCAACTGCAGTATTGTTCAACTTGGGCTCATATATTTGACA
TGTGATGGATTTTAAATTCAACATTTTCTGAAAATTATCACACAGTCTAACTGCATCATATATTTCCTATGCCTGCAGCAGATGACCAGTTGATATTGCC
ATTTCTGAATTCATTATCGCCAGAGAGATCAGTTGATGTTGAGAATCTCAATAAGAAGAAGAAATGAAGTGTTTTGCTTTGGTTTCGAATTCGTCGCAGT
TTCTGTGATCCAAACTTTTAGTGTTACAGAAGGCATGGAAGTGCATGAAAGTACCGGTACTGAAAATTGCATTGGTAGTTTGGTACCGTAGAAGAAATAA
AAGGGCAAGGTAGTTTAAATGTAATAAGATCACAATTCTGACAGTACTGAATATTGCACTGCTAGCTTATAATTTGCCCCCTTC