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Detailed information on CNT30692476


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS2|TBB8_ORYSJ, E-value = 7e-70

BLAST vs NONCODE:
NONBNAT007651, E-value = 4e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674634Oryza sativaSetaria viridis51.1340.4189.42293forward
CNT30522155Oryza sativaSetaria italica31.0620.2594.94178forward
CNT30641074Oryza sativaNymphaea colorata41.0164.0394.47235forward
CNT30534291Oryza sativaEucalyptus grandis28.9726.0684.34166forward
CNT30377201Oryza sativaArabidopsis thaliana54.4554.5580.77312forward
CNT30728063Oryza sativaCorchorus capsularis58.6438.7180.36336forward
CNT30381383Oryza sativaManihot esculenta57.0718.6179.2327forward
CNT30629386Oryza sativaVigna unguiculata18.8541.8691.67108forward
CNT30486254Oryza sativaOlea europaea16.5824.887.3795forward
CNT30708222Oryza sativaGlycine max14.6620.8486.984forward
CNT30291318Oryza sativaTriticum aestivum14.6625.2394.0584forward
CNT30223001Oryza sativaHordeum vulgare22.5146.486.05129forward
CNT30390564Oryza sativaTriticum turgidum33.5163.1688.02192forward
CNT30567082Oryza sativaActinidia chinensis54.170.4582.58310forward
CNT30586804Oryza sativaMusa acuminata30.8922.9390.96177forward
CNT30511260Oryza sativaSolanum lycopersicum28.6240.6981.71164forward
CNT30252641Oryza sativaAvena sativa46.632.8485.02267forward
CNT30261872Oryza sativaBrassica rapa55.8536.1681.25320forward
CNT30614070Oryza sativaArabis alpina56.5423.4481.17324forward
CNT3015387Oryza sativaZea mays53.0518.7986.18304forward
CNT3041960Oryza sativaChlamydomonas reinhardtii35.2559.2489.11202forward
CNT30209019Oryza sativaHelianthus annuus28.119.2880.12161forward
CNT30681848Oryza sativaTriticum urartu47.6430.8587.55273forward
CNT30721961Oryza sativaTriticum spelta18.8536.4995.37108forward
CNT30341625Oryza sativaEragrostis tef55.532.6288.99318forward
CNT30368415Oryza sativaSorghum bicolor59.1632.9486.73339forward
CNT30595966Oryza sativaOryza meridionalis27.5725.7799.37158forward
CNT30370171Oryza sativaOryza glumipatula101.7568.7597.26583forward
CNT3022498Oryza sativaPopulus trichocarpa30.1931.6384.97173forward
CNT30119164Oryza sativaCitrus clementina28.134.5580.75161forward
CNT3036150Oryza sativaCucumis melo15.5326.4185.3989forward
CNT30330123Oryza sativaDioscorea rotundata43.9824.7584.13252forward
CNT30150001Oryza sativaBrachypodium distachyon13.2624.0592.1176forward
CNT3099512Oryza sativaOryza rufipogon24.2623.2494.24139forward
CNT30575530Oryza sativaOryza barthii61.4338.9899.43352forward
CNT30116105Oryza sativaOryza nivara25.3119.6593.79145forward

Expression of CNT30692476

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLLSASVNSISSIPSLVYQWRKALRRNMAVNCSLTRRNISWMEVELPTKVDAMERPTGGMSQTLDLTLLGIHSTK*

>peptide 2 (39 aa)
MTTNEGMQQVVAHSTQAAAVAADTATAHCVFVPIEIYVA*

Sequence

>CNT30692476
CACGGTTCATGTACATGAATAAACAAATTTAGACAGAGAACAACGATGACAACGAACGAAGGCATGCAACAAGTAGTAGCGCACAGTACACAAGCAGCAG
CAGTAGCAGCAGACACGGCAACGGCACATTGTGTGTTTGTACCGATCGAAATATATGTAGCGTAGCGTAGCAGAGAGCCAGAGAGGCAAAGCGGGAGGGA
TCGATCGATCGATCGATCAGGCCTCGTCGGCGTCGTCCTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACGAGGTCGTTCATGTTGCTCTCGGC
CTCGGTGAACTCCATCTCGTCCATTCCCTCGCTGGTGTACCAGTGGAGGAAGGCCTTGCGGCGGAACATGGCGGTGAACTGCTCGCTGACGCGGCGGAAC
ATCTCCTGGATGGAGGTGGAGTTGCCGACGAAGGTGGACGCCATGGAGAGGCCGACGGGGGGGATGTCGCAGACGCTGGACTTGACGTTGTTGGGGATCC
ACTCCACGAAGTAGGACGAGTTCTTGTTCTGCACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCCT