Detailed information on CNT30692473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519927Oryza sativaSetaria italica32.3623.2588.47399forward
CNT30243876Oryza sativaAvena sativa17.4428.5585.58215forward
CNT30347744Oryza sativaEragrostis tef46.7236.7883.85576forward
CNT30575497Oryza sativaOryza barthii50.6149.7697.44624forward

Expression of CNT30692473

Peptides detected in this lncRNA

>peptide 1 (53 aa)
LSTILPTGCSGTMSSGHVLVTSSGSKSKRSSWSGSMVWMNSFHSGKLPAAMES*

>peptide 2 (79 aa)
MAKPRGSRRVSGLPRSWMTVEKRTMTGVWTPGARRKSAQVRWVMSWVTSKKPLALAPRACTTRSGIRSLSKLASFSTRW*

>peptide 3 (70 aa)
VEHHPPHGLQRDDVLGPRLGDVERVEVEAVLVVGVDGLDEQLPLREVAGGDGVVEVLRGVAVVGFQWNLT*

>peptide 4 (68 aa)
MPMSSKRKVNMWRLSGWWEKKSRMRQFSWTCDLGLGLSECTMSGNFMPSRMKKTGKLLPTRSQLPSRV*

Sequence

>CNT30692473
GTTGAGCACCATCCTCCCCACGGGCTGCAGCGGGACGATGTCCTCGGGCCACGTCTTGGTGACGTCGAGCGGGTCGAAGTCGAAGCGGTCCTCGTGGTCG
GGGTCGATGGTCTGGATGAACAGCTTCCACTCCGGGAAGTTGCCGGCGGCGATGGAGTCGTAGAGGTCCTGCGTGGCGTGGCTGTGGTGGGCTTCCAGTG
GAACTTGACGTAGTGCGACTTGCCGGCGCGGTTGACGAGCGTGTAGGTGTTGACGCCGGAGCCGTCCATGTGGCGGTAGTCGGCGGGGATGCCGATGTCA
TCGAAGAGGAAGGTGAACATGTGGAGGCTCTCCGGGTGGTGGGAGAAGAAGTCGAGGATGCGCCAGTTCTCCTGGACGTGCGACTTGGGGTTGGGCTTGA
GCGAGTGCACCATGTCCGGGAACTTCATGCCGTCGCGGATGAAGAAGACGGGGAAGTTGTTGCCGACGAGGTCCCAGTTGCCCTCCCGGGTGTAGAACTT
GATGGCGAAGCCACGCGGGTCGCGGAGGGTCTCCGGGCTGCCGCGCTCGTGGATGACGGTGGAGAAGCGGACGATGACCGGGGTCTGGACGCCCGGGGCG
CGGAGGAAGTCGGCGCAGGTGAGGTGGGTGATGTCGTGGGTGACCTCGAAGAAGCCCTTGGCGCTGGCGCCGCGGGCGTGCACCACGCGCTCCGGGATAC
GCTCCCTGTCGAAGTTGGCCAGCTTCTCAACCAGGTGGTAGTCCTCCAGAAGGATCGGGCCTGAATTTTCAGTGTTCCCAGTTCAGTTCAGTTCATCGAT
CACCACTCGACTTGAATTAAACTGACAAACATGCTACGGAACACTATCGTAAAATCGTAATTAGTACTAATTTACTGTAGTGAATTGCTCCCCACGGAGT
CTGGACCTAGCTGAGATGTACAGAATCGTATGAAATTCATGTGCTCTAACAAACGCAACAGTTTCAATTTGTAGGAGGAACTAGGAAACAATTCAATTTT
CAAATGATTCCGCCTGTAGCTTGAAAACACAACAGGTTCTAATCTTCTGGACATGGTGTTATAAGTTGTAACCAAATACTATCAAAGTATTTTTTAGGAA
AAAAAACAAATGAATCCAGACTAGCACAGATTTACTGGGATGACGTTCTTGAATTTAAACTGGTAGCAGCAAAGGCTACACCACAGAAGACACAAAAAGT
AATCTCAAACCACAGGAGGAAGGGGGATTGGCG