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Detailed information on CNT30692464


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30106100Oryza sativaOryza longistaminata23.2640.7699.07214forward
CNT30100789Oryza sativaOryza rufipogon33.1560.16100305forward
CNT30116188Oryza sativaOryza nivara68.730.7299.37632forward

Expression of CNT30692464

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLSVWKDMEIICHDICEHLISETMDLFPLISCCCYYRD*

>peptide 2 (30 aa)
MSQDRHALQGKKKEVMKLLLSTLLCELSNE*

>peptide 3 (63 aa)
MNNVVTDSQETGDPLSSQAQRKLSFCWKLRSPSLQPIRLGIIQCFHAKANDLAHGSWWPMSSS*

>peptide 4 (74 aa)
MRRPMIWHMGAGGRCLRPNQTRCCCCCSSHMLLLCPTLTDILIAQRRPDHRTATDADCSCKMQVTRGLLVKVRV*

Sequence

>CNT30692464
ATGAAATGATAAAACCTGCAGGATGTTCAGTACCAATCAGGTTTTTCTCTGAAACCGTGGGCTGGGTGGTATAGTATGCTGTCTGTCTGGAAAGATATGG
AGATAATTTGTCATGATATTTGTGAACATCTTATCTCTGAAACCATGGATCTTTTTCCATTGATCAGTTGCTGCTGCTATTATAGAGACTGACACACATG
TCACAAGATCGTCATGCTCTTCAGGGAAAAAAAAAAGAAGTGATGAAGCTGCTGCTCAGTACACTTTTATGTGAGCTATCTAATGAATAATGTGGTCACA
GATTCACAAGAAACCGGTGATCCCTTGTCTTCTCAAGCTCAACGGAAATTGAGCTTCTGTTGGAAACTACGCTCCCCGTCTCTCCAGCCGATTCGGCTTG
GAATTATCCAATGCTTCCATGCGAAGGCCAATGATTTGGCACATGGGAGCTGGTGGCCGATGTCTTCGTCCTAACCAAACCAGATGCTGCTGCTGCTGCA
GCTCCCACATGCTCCTGCTTTGCCCTACTCTGACTGACATTTTGATTGCCCAACGGCGGCCGGATCATCGCACAGCCACAGATGCAGACTGCTCATGCAA
GATGCAAGTGACTCGAGGTCTTTTGGTAAAGGTACGAGTATAAAAAAATGTACTTCATGACATTCAGCTGTTGCGTTTTTTTACCTTTATTTTTTTGTTT
TTGCCCAAATTTTGGTTGATACCTAACCTTGCCATAACTAAGTTTAGACTAGTTGAGGCATGGTGGCACAAGTGTGACTTAGAAATAGTTGGCCACAAGT
GTGGCATACTTAGCTCCAAATTTGAGAGTATGACATGTATGTCCCAAACTAAGAAAGTATGGCACGACACAAATGCGGTAGCGAAACAAACACATACCTA
AGAAATTGTGGCATAATTGA