Detailed information on CNT30692446


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 2e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30575527Oryza sativaOryza barthii64.8248.18100304forward

Expression of CNT30692446

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VAAAAVVFFFLLRFDSSLRLRARAARRGGVRGALD*

>peptide 2 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

Sequence

>CNT30692446
CCGTAGCCGCAGCTGCGGTGGTTTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGC
GTTGGATTAGTACCGGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGGCGCTGAGGTGGGGGAGGTGACCCTCGGTCTGGAGGAACTCGACG
GTGGTGCGGCCGCCGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCG
CCGCCGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACCCCGTCGCCCACGCCGAGTAGTTCGCCCCCATCGCGTCGAACACCTGCTGTATCTCCTCCAG
CTCGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCACACACATGTCCGTGCTCCCCGATCGCC