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Detailed information on CNT30692428


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678417Oryza sativaSetaria viridis18.625092.12165forward
CNT30522336Oryza sativaSetaria italica16.8256.2393.96149forward
CNT30639906Oryza sativaNymphaea colorata20.8812.983.24185forward
CNT3070001Oryza sativaQuercus suber21.5636.5282.72191forward
CNT30524833Oryza sativaPhaseolus vulgaris20.4311.9681.22181forward
CNT30296550Oryza sativaTriticum aestivum22.3547.3789.9198forward
CNT30589303Oryza sativaMusa acuminata23.5928.4787.56209forward
CNT30552945Oryza sativaOryza glaberrima44.9248.8397.99398forward
CNT30439764Oryza sativaAegilops tauschii20.7739.489.13184forward
CNT30448528Oryza sativaSaccharum spontaneum21.5612.3191.62191forward
CNT301613Oryza sativaZea mays30.747.7291.18272forward
CNT3067156Oryza sativaLeersia perrieri20.266.5496.09179forward
CNT30683907Oryza sativaTriticum urartu35.8948.490.25318forward
CNT30361641Oryza sativaSorghum bicolor22.817.1694.06202forward
CNT30596039Oryza sativaOryza meridionalis11.0637.410098forward
CNT30369879Oryza sativaOryza glumipatula39.548.75100350forward
CNT30147849Oryza sativaBrachypodium distachyon25.6251.4793.39227forward
CNT30100699Oryza sativaOryza rufipogon80.76599.86715forward
CNT30579178Oryza sativaEchinochloa crusgalli23.8117.2294.79211forward
CNT30116295Oryza sativaOryza nivara50.6847.6699.78449forward
CNT30603857Oryza sativaOryza punctata74.675.9894.25661forward

Expression of CNT30692428

Peptides detected in this lncRNA

>peptide 1 (45 aa)
AATRTRGAPRWRAGGVGLVPGESAAEHLGEEAGGTRRWCGRRGGP*

>peptide 2 (53 aa)
MPSTPRRSVLKTVWQTWREMSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

>peptide 3 (72 aa)
MSVLPDRPRSDSILRARKDSHQWKRAYRGEAPMRTSLAKRSGRRMEARMPIMAETEWPTKAQRGMRSASRLS*

>peptide 4 (46 aa)
GYAHARRAAVACGGRWISTGRERGGAPGRGGWGNSTVVRPPRWALR*

Sequence

>CNT30692428
GCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTGGATTAGTACCGGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGG
GAACTCGACGGTGGTGCGGCCGCCGAGGTGGGCCTTGAGGTAGGCGGCGACGGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGGACGACGACGCAGGGG
GCGCGGACCATGCCGAGCACGCCGCGGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGA
ACTCCTGCACCGCCGCCGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACCCCGTCGCCCACGCCGAGTAGTTCGCCCCCATCGCGTCGAACACCTGCTG
TATCTCCTCCAGCTCGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCACACACATGTCCGTGCTCCCCGATCGCCCCCGATCAGATTCAATTTT
AAGAGCGAGAAAGGATTCACATCAGTGGAAGCGAGCGTACCGGGGAGAGGCGCCGATGAGGACAAGCTTGGCGAAGAGGTCAGGTCGTCGGATGGAGGCG
AGGATGCCGATCATGGCGGAGACGGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGTTGTCGTAGCGGCGGAAGTCGAAGTGGTCCG
GGTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACGACGCGGTGGTCGCGGGTGAGGTACGGCAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAA
GCCATGCGACAGCACCACCACCCGCTCGCCGCTCCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCGCCCCGCTCGGCGCCG