CANTATAdb - search

Detailed information on CNT30692367

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30369844	Oryza sativa	Oryza glumipatula	81.58	99.53	99.84	642	forward
CNT30105946	Oryza sativa	Oryza longistaminata	99.87	40.96	98.73	786	forward
CNT30100816	Oryza sativa	Oryza rufipogon	100	69.28	100	787	forward
CNT30575866	Oryza sativa	Oryza barthii	98.6	40.97	99.87	776	forward
CNT30603883	Oryza sativa	Oryza punctata	43.2	96.32	90.88	340	forward

Expression of CNT30692367

Peptides detected in this lncRNA

>peptide 1 (95 aa)
ETDAPPGLTTLGSFEGNCAEYKFGGETELTSKDLGGAIGLFKSERLSSFLDISFEGNLGGGGGMLLGGGGSMFLGGGGGGGSMFLDADGCAETCG*

>peptide 2 (34 aa)
MLPKPSKPVLTNLDLCCEFWKNETKRLLHQIPLH*

Sequence

>CNT30692367
CAGAAACAGATGCCCCACCAGGTTTGACCACTCTAGGCTCCTTTGAAGGTAATTGTGCTGAATACAAATTTGGTGGTGAGACTGAACTCACGTCCAAGGA
TCTCGGAGGTGCCATTGGCTTGTTTAAATCTGAACGCCTATCCTCATTTCTTGACATCTCATTTGAAGGAAACTTAGGCGGTGGCGGAGGCATGCTCTTG
GGAGGTGGGGGTAGCATGTTCCTGGGTGGTGGTGGTGGTGGCGGCAGCATGTTCTTGGATGCAGATGGATGTGCAGAAACATGCGGTTGATCTTGAAGAA
GCATCCCATTTGATCCAGGCTGAACTTTAATTGGAGGTTCAATCGATGAATTGGTCATGTTACCTAAACCGTCTAAACCTGTCTTAACAAATTTGGACCT
CTGTTGTGAGTTCTGGAAAAATGAAACAAAAAGACTTCTCCATCAAATTCCTTTGCATTAGAGTAAATAGTACACAATGAAATACAAATAAAGGATGAAA
TCAACAAAATTTGTGCATAAACAGCACAAATCCATAAATTGAAAGCATTATGACTGGTAAGCATCATACATGGATATCAGTTAACCATGCAGAGTTATAG
AGATTAACTTACATCTTTCTAAAGTTCATATAACTAAAGAGCATAACGGAAACTTCATAAAAAGTGTCTACAAAGAAATAAAGCAAAAGGTACTGCATTA
ATACTATTGTTTCATTAGGCTAAGAAGTTTCTGCTTTTCTAGGACTACTTGTGAATGTCACTGAGTGAGAACTCTTTAACGTGCAAA