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Detailed information on CNT30692359


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100826Oryza sativaOryza rufipogon12.4636.94100181forward
CNT30116399Oryza sativaOryza nivara13.0827.3100190forward

Expression of CNT30692359

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSLNLVFLFPIDPAVSLSEDLQIPFLLSSQGWSCCCSLNCQEKCSEN*

>peptide 2 (38 aa)
TSTPNGLDPNQIHGGGGRLHGAWRLIERRRARASRIVE*

>peptide 3 (36 aa)
FNTKWSRSKPDPWRRGEAARRVEIDRATTSSGQSNS*

>peptide 4 (35 aa)
MVILKFGDFRSKTQSNRIPSQAPNSSKTEFFVLHK*

Sequence

>CNT30692359
ACTTCAACACCAAATGGTCTAGATCCAAACCAGATCCATGGAGGAGGGGGGAGGCTGCACGGCGCGTGGAGATTGATAGAGCGACGACGAGCTCGGGCCA
GTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGGTGAGCCTCT
CTGAAGACCTCCAAATCCCTTTCCTCCTTAGCAGTCAAGGCTGGAGCTGCTGCTGTTCTCTTAATTGCCAAGAGAAATGCTCCGAGAACTGAGTTGTTGT
GGCTGCTGCATTGTACTCTCGATGATTTTGTATCTTTAGTTCCTTAGAGCATCACCAACAATATCTGTATATGGTTATCCTGAAATTTGGAGATTTTCGT
TCAAAAACCCAGTCCAACAGAATCCCTAGCCAAGCGCCCAATAGTTCAAAAACCGAATTTTTCGTTCTCCACAAGTAGGGAGAGGCGCTCGCTCCCAATC
TCCCTCTCTCGTGCCGTCGTGCGAATTCCCACGCGCACGTGAAGTGTTCTCGACAGGGGGTTCATCACGAGGTTGTTCGCCGTCGCATCGAGGTGTCCTA
CAGGTGCCCACATCTCACGCGCGCGCCGCTGCCTAGAGCTTTCTCGGCGTCGATAGTTCCTGCTCTGGCGGCGGCAGCGGCACCATCTCCACTACAGCCA
GGCGAACTTCCATCGGCCCGAGTTGGTTTCTCCTCAAATCGGGATTGGTCTCTCGATGATGGAGATGAGCGAAGGTATCTGCTAGTGCTTGCTAGTTTTG
GCGCTGCTAATCTGCTACTACGAATTCTACAGTTGGTACTGAATAATGTTGTTGGTGCCGGTGGTGGTGTTGAAAGTTGATGTTGGTGTTGCTGATGATG
TGCTGTTGTTGATGCTACTGACCTGCTGCTAGTTGTGATCTGCTGCTTGTTGCTTGCCATGCTATTGCTAATTGCCATGCTGTTGCCGATCTGAATTTTT
TTTTGAACGACGTTTGCTGATCTGAGTTGACGCTACTGATCTGCTATTGTTGAAAATGGTACGATGTTGTTGGTTCTGGTTGGTAATTAGGGACTTTGCT
GATGCTGCTACTTGTAGTGGTTCTGCTTGATTGTTTGCAGGATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGT
GGTTCCCGCGATCAATGGTCACACGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCAGTTGGTAGTTTTGTAGAGGGACCACTTT
TTAGATTTAGGGAGTCAATTTTAGCCAATCTCTTGGAGGGCTCAATATTTTAACACCTTAAATTTTATTTAAGATTCCCATAAACAAAATTTTGGGATAC
TCTTGGTGATGCTCTTACTGAGTTATTCTAGTACAGTACTGAATTTTAACACC